Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20682
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   3e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           86   3e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              70   2e-12
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     42   5e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.41 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              31   0.95 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.2  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   6.7  
SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_33738| Best HMM Match : Pox_A32 (HMM E-Value=0.33)                  28   8.8  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +3

Query: 30  MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 209
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score =  114 bits (274), Expect = 8e-26
 Identities = 55/81 (67%), Positives = 61/81 (75%), Gaps = 6/81 (7%)
 Frame = +1

Query: 499 NQNAWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGI 660
           +Q  WFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDVYKIGGI
Sbjct: 59  SQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGI 118

Query: 661 GTVPVGRVETGVLKPGTIVVF 723
           GTVPVGRVETGVLKPGT+V F
Sbjct: 119 GTVPVGRVETGVLKPGTVVTF 139


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 34/85 (40%), Positives = 60/85 (70%)
 Frame = +3

Query: 3   EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
           EK+E++A+E  + ++  +W LD  + ER++G T+++    F+T   + T++DAPGH+ F+
Sbjct: 177 EKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFV 236

Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
            NMI+G +QAD  VL+++A  GEF+
Sbjct: 237 PNMISGATQADLGVLVISARKGEFE 261



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 33/69 (47%), Positives = 48/69 (69%)
 Frame = +2

Query: 233 SCRYR*IQAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 412
           S R    + G  + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ 
Sbjct: 254 SARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTP 313

Query: 413 YIKKIGYNP 439
           ++KK+G+NP
Sbjct: 314 FLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 29/52 (55%), Positives = 41/52 (78%)
 Frame = +3

Query: 102 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFK 257
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEF+
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFE 52



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 352
           +AG    GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 52  EAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +3

Query: 66  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 245
           D ++ ER+RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 246 G 248
           G
Sbjct: 115 G 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 144 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 248
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 93  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 239
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
 Frame = +3

Query: 66  DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 206
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQ 124

Query: 207 -QADCAVLIVAAGTGEFKLVSLR 272
              +C    +  G G+   V +R
Sbjct: 125 IIGECGT--IEGGFGQSGKVKIR 145


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 69  KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 236
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 150 IIDAPGHRDFIKNMITGTSQADCAVLIV 233
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 60   VLDKLKAERERGITI 104
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 353  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLEPSTKMLGS 517
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E +  ++ +
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIEFAGAVVRN 1121

Query: 518  RD 523
             D
Sbjct: 1122 ND 1123


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 138 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 248
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = +2

Query: 275 GQTREHALLAFTL-GVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVA 451
           G   E AL+A  +  ++ L++  NK +  +P   E     I++E  S   +  +   ++ 
Sbjct: 352 GSQSERALVAMIVENLRSLLI--NKEEQAKPVGEEDLLSRIEREEVSEALEDAFKELSLE 409

Query: 452 FVPISGWHGDNMLEPSTKMLGSRDGRWSVKKAKLTENASLKLS 580
               S    D  + PST      DG     + +++ N SL+LS
Sbjct: 410 K---SAVQDDAKVTPSTPQQDEEDGSKLTDRIQVSPNISLQLS 449


>SB_33738| Best HMM Match : Pox_A32 (HMM E-Value=0.33)
          Length = 437

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 563 HFPSALPSLRSTCHPLNQAFWLKAPTCCLRA 471
           H    L +LRS+C P ++AF L++  C  R+
Sbjct: 113 HTRQGLATLRSSCTPTSRAFALQSTACETRS 143


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 497 STKMLGSRDGRWSVKKAKLTENASLKLSMPSCHLPAPLTSP 619
           S++ L     RWS  KAK   +  +K S P  H   PL  P
Sbjct: 514 SSQSLNKSRARWSTTKAKQPFSVVVKESKPIPHPVTPLLPP 554


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 461  ISGWHGDNMLEPSTKMLGSRD 523
            I GW G+N+LE S++++ S D
Sbjct: 1091 IEGWEGENVLERSSELIHSGD 1111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,247,808
Number of Sequences: 59808
Number of extensions: 571377
Number of successful extensions: 1775
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)