Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20682
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 155 2e-38
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 155 2e-38
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 155 2e-38
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 155 2e-38
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 103 1e-22
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 83 2e-16
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 65 5e-11
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 65 5e-11
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 43 2e-04
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 43 2e-04
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 43 2e-04
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 41 0.001
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 38 0.005
At5g13650.2 68418.m01585 elongation factor family protein contai... 36 0.021
At5g13650.1 68418.m01584 elongation factor family protein contai... 36 0.021
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 36 0.027
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 36 0.027
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 36 0.036
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.25
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 32 0.33
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 32 0.33
At2g31060.1 68415.m03790 elongation factor family protein contai... 32 0.44
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.44
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.44
At5g34780.1 68418.m04048 dehydrogenase E1 component family prote... 31 0.77
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 31 1.0
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 1.0
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.8
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.8
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.8
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot... 29 2.4
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 2.4
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 2.4
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 29 3.1
At2g39560.1 68415.m04853 expressed protein 29 4.1
At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putativ... 29 4.1
At5g39080.1 68418.m04728 transferase family protein similar to a... 28 5.5
At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein s... 28 5.5
At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5) M... 28 7.2
At5g19490.1 68418.m02322 repressor protein-related similar to re... 28 7.2
At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329... 27 9.5
At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329... 27 9.5
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 9.5
At1g01060.2 68414.m00007 myb family transcription factor contain... 27 9.5
At1g01060.1 68414.m00006 myb family transcription factor contain... 27 9.5
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 155 bits (377), Expect = 2e-38
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
E+FEK+A EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFI
Sbjct: 40 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFI 99
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
KNMITGTSQADCAVLI+ + TG F+
Sbjct: 100 KNMITGTSQADCAVLIIDSTTGGFE 124
Score = 129 bits (312), Expect = 2e-30
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = +2
Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 433
+AGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK+GY
Sbjct: 124 EAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGY 183
Query: 434 NPAAVAFVPISGWHGDNMLEPSTKM 508
NP + FVPISG+ GDNM+E ST +
Sbjct: 184 NPDKIPFVPISGFEGDNMIERSTNL 208
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1
Query: 556 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF 723
G L+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V F
Sbjct: 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTF 268
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 155 bits (377), Expect = 2e-38
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
E+FEK+A EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFI
Sbjct: 40 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFI 99
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
KNMITGTSQADCAVLI+ + TG F+
Sbjct: 100 KNMITGTSQADCAVLIIDSTTGGFE 124
Score = 129 bits (312), Expect = 2e-30
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = +2
Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 433
+AGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK+GY
Sbjct: 124 EAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGY 183
Query: 434 NPAAVAFVPISGWHGDNMLEPSTKM 508
NP + FVPISG+ GDNM+E ST +
Sbjct: 184 NPDKIPFVPISGFEGDNMIERSTNL 208
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1
Query: 556 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF 723
G L+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V F
Sbjct: 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTF 268
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 155 bits (377), Expect = 2e-38
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
E+FEK+A EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFI
Sbjct: 40 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFI 99
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
KNMITGTSQADCAVLI+ + TG F+
Sbjct: 100 KNMITGTSQADCAVLIIDSTTGGFE 124
Score = 129 bits (312), Expect = 2e-30
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = +2
Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 433
+AGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK+GY
Sbjct: 124 EAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGY 183
Query: 434 NPAAVAFVPISGWHGDNMLEPSTKM 508
NP + FVPISG+ GDNM+E ST +
Sbjct: 184 NPDKIPFVPISGFEGDNMIERSTNL 208
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1
Query: 556 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF 723
G L+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V F
Sbjct: 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTF 268
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 155 bits (377), Expect = 2e-38
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
E+FEK+A EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFI
Sbjct: 40 ERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFI 99
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
KNMITGTSQADCAVLI+ + TG F+
Sbjct: 100 KNMITGTSQADCAVLIIDSTTGGFE 124
Score = 129 bits (312), Expect = 2e-30
Identities = 59/85 (69%), Positives = 72/85 (84%)
Frame = +2
Query: 254 QAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 433
+AGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK+GY
Sbjct: 124 EAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGY 183
Query: 434 NPAAVAFVPISGWHGDNMLEPSTKM 508
NP + FVPISG+ GDNM+E ST +
Sbjct: 184 NPDKIPFVPISGFEGDNMIERSTNL 208
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1
Query: 556 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF 723
G L+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V F
Sbjct: 213 GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTF 268
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 103 bits (247), Expect = 1e-22
Identities = 42/84 (50%), Positives = 63/84 (75%)
Frame = +3
Query: 6 KFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 185
K+EK+A+ GKGSF YAW LD+ ERERGIT+ +A+ F + +++V ++D+PGH+DF+
Sbjct: 273 KYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVP 332
Query: 186 NMITGTSQADCAVLIVAAGTGEFK 257
NMI G +QAD A+L++ A G F+
Sbjct: 333 NMIAGATQADAAILVIDASVGAFE 356
Score = 61.3 bits (142), Expect = 6e-10
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = +2
Query: 254 QAGISK-NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 430
+AG GQTREHA + GV+Q+IV +NKMD YS+ RF+ IK+ V S+++
Sbjct: 356 EAGFDNLKGQTREHARVLRGFGVEQVIVAINKMDIV--GYSKERFDLIKQHVGSFLQSCR 413
Query: 431 YNPAAVAFVPISGWHGDNML-EPSTKMLGS 517
+ +++ ++P+S N++ PS L S
Sbjct: 414 FKDSSLTWIPLSAMENQNLVAAPSDNRLSS 443
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 556 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVV 720
G CL++A+D++ P R KPL +P+ D + G V G++E G ++PG+ V+
Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVM 502
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 82.6 bits (195), Expect = 2e-16
Identities = 35/85 (41%), Positives = 59/85 (69%)
Frame = +3
Query: 3 EKFEKKAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 182
+K+EK+A++ + S+ A+++D + ER +G T+++ FET TI+DAPGH+ ++
Sbjct: 134 QKYEKEAKDKSRESWYMAYIMDTNEEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYV 193
Query: 183 KNMITGTSQADCAVLIVAAGTGEFK 257
NMI+G SQAD VL+++A GEF+
Sbjct: 194 PNMISGASQADIGVLVISARKGEFE 218
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +2
Query: 233 SCRYR*IQAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 412
S R + G + GQTREH LA TLGV +LIV VNKMD +S+ R++EI++++
Sbjct: 211 SARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDDPTVNWSKERYDEIEQKMVP 270
Query: 413 YIKKIGYNPAA-VAFVPISGWHGDNM 487
++K GYN V F+PISG G NM
Sbjct: 271 FLKASGYNTKKDVVFLPISGLMGKNM 296
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +1
Query: 556 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVV 720
G E LD+I P R + P R+P+ D +K +GTV +G+VE+G ++ G +V
Sbjct: 310 GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSLV 362
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +3
Query: 63 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 242
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 243 TG 248
G
Sbjct: 177 DG 178
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 565 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 717
L++A+D +P P R T+ P L ++DV+ I G GTV GRVE G +K G V
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETV 320
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 278 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE-EIKKEVSSY 415
QT+EH LLA +GV ++V +NK D + E E+++ +SSY
Sbjct: 182 QTKEHILLAKQVGVPDMVVFLNKEDQVDDAELLELVELEVRELLSSY 228
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +3
Query: 63 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 242
+DK E++RGITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V+
Sbjct: 105 IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGP 164
Query: 243 TG 248
G
Sbjct: 165 DG 166
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +1
Query: 565 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 708
L++A+D +P P R DKP +P++DV+ I G GTV GR+E GV+K G
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVG 297
Score = 35.5 bits (78), Expect = 0.036
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2
Query: 278 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 457
QT+EH LLA +GV L+ +NK+D + P E +E+ S+ K G + +
Sbjct: 170 QTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPGDDIPIIRGS 229
Query: 458 PISGWHGDN 484
+S G N
Sbjct: 230 ALSALQGTN 238
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 63 LDKLKAERERGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 230
LD + ERERGITI + + +E + + + +ID PGH DF + + + A+L+
Sbjct: 123 LDNMDLERERGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLV 182
Query: 231 VAAGTG 248
V A G
Sbjct: 183 VDASQG 188
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +3
Query: 63 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 242
+D + ERE+GITI A Y V IID PGH DF + D A+L++ +
Sbjct: 108 MDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSV 167
Query: 243 TG 248
G
Sbjct: 168 GG 169
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +3
Query: 63 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 242
+D + ERE+GITI A Y V IID PGH DF + D A+L++ +
Sbjct: 108 MDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSV 167
Query: 243 TG 248
G
Sbjct: 168 GG 169
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +3
Query: 63 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 242
+D L E+ R IT+ + + Y + +ID+PGH DF + T +D A+++V A
Sbjct: 49 MDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAV 108
Query: 243 TG 248
G
Sbjct: 109 EG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 63 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 242
+D ++ E+ERGITI A K+ + IID PGH DF + D A+ + +
Sbjct: 136 MDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 195
Query: 243 TG 248
G
Sbjct: 196 AG 197
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 60 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 239
++D ERERGITI V IID PGH DF + + D +L+V +
Sbjct: 120 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDS 179
Query: 240 GTG 248
G
Sbjct: 180 VEG 182
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 60 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 239
++D ERERGITI V IID PGH DF + + D +L+V +
Sbjct: 119 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDS 178
Query: 240 GTG 248
G
Sbjct: 179 VEG 181
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.027
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 81 ERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 245
E+ER I+I + L + Y I+D PGH +F M AD AVLIV A
Sbjct: 185 EQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAE 244
Query: 246 G 248
G
Sbjct: 245 G 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.027
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 81 ERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 245
E+ER I+I + L + Y I+D PGH +F M AD AVLIV A
Sbjct: 185 EQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAE 244
Query: 246 G 248
G
Sbjct: 245 G 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 35.5 bits (78), Expect = 0.036
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +3
Query: 63 LDKLKAERERGITIDIALWKF---------ETSKYYVTIIDAPGHRDFIKNMITGTSQAD 215
LDKL +RERGIT+ E S Y + +ID PGH DF + S
Sbjct: 103 LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSACQ 160
Query: 216 CAVLIVAAGTG 248
A+L+V A G
Sbjct: 161 GALLVVDAAQG 171
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 144 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 248
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 129 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 239
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 129 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 239
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +1
Query: 517 KGW--QVERKEGKADGKCLIEALDAIL----PPARPTDKPLRLPLQDVYKIGGIGTVPVG 678
+GW K+ D K + + LDA++ PP D+P + + + K +G + G
Sbjct: 82 EGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTG 141
Query: 679 RVETGVLKPG 708
RV +GV++ G
Sbjct: 142 RVTSGVVRVG 151
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 141 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 239
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 123 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 239
FE SK +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At5g34780.1 68418.m04048 dehydrogenase E1 component family protein
similar to SP|P50136 2-oxoisovalerate dehydrogenase
alpha subunit, mitochondrial precursor (EC 1.2.4.4)
(Branched-chain alpha-keto acid dehydrogenase component
alpha chain) {Mus musculus}; contains Pfam profile
PF00676: Dehydrogenase E1 component
Length = 365
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +1
Query: 463 FWMARRQHVGAFNQNAWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 642
+W R V F ++ GW E E K + L AI + +PL DV
Sbjct: 151 YWKMSRNSVNRFRKSVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTELFNDV 210
Query: 643 YKI 651
Y +
Sbjct: 211 YDV 213
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 308 TLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 469
T GV++ G+ + +S PP S R E++ E S++ Y+P V F +G
Sbjct: 18 TAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAH----NYHPVPVVFSRANG 67
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 538 KEGKADGKCLIEALDAILPPARPTDKP 618
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 150 IIDAPGHRDFIKNMITGTSQADCAVLIV 233
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 150 IIDAPGHRDFIKNMITGTSQADCAVLIV 233
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 150 IIDAPGHRDFIKNMITGTSQADCAVLIV 233
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 {Homo sapiens}; contains
Pfam profile PF01369: Sec7 domain
Length = 1756
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = -2
Query: 657 TTDFVYVLQGKTQGLVSGAGRWQDGIESFNEAFSVSFAFFTLHLPSLEPSILVEGSNM 484
TT ++ VLQ T GL A +D +E E VSF L S S L E +NM
Sbjct: 1631 TTIYLDVLQKTTSGLADDASNSEDRLEGAAEEKLVSFCEQVLKETSDLQSTLGETTNM 1688
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 132 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 233
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 144 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 233
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +3
Query: 69 KLKAERERGITIDIALWKFET----SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 236
K+ A GIT I +K +D PGH F G D A+++VA
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVA 584
Query: 237 AGTG 248
A G
Sbjct: 585 ADDG 588
>At2g39560.1 68415.m04853 expressed protein
Length = 233
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 713 MVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLS 609
+ P + TP ++ T P+ P+L SC GR+ +S
Sbjct: 144 ITPPYLTPRASPSLFTPPLTPLLMESCNGRKEEIS 178
>At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 472
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/63 (26%), Positives = 23/63 (36%)
Frame = +1
Query: 463 FWMARRQHVGAFNQNAWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 642
+W R V F + GW E E K + L AI + +PL DV
Sbjct: 381 YWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTELFNDV 440
Query: 643 YKI 651
Y +
Sbjct: 441 YDV 443
>At5g39080.1 68418.m04728 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 463
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 621 QGLVSGAGRWQDGIESFNEAFSVSFAFFTLH--LPSLEPSILVEGSN 487
+GL++ A D IE ++E+F+ F + LP ILV GSN
Sbjct: 353 EGLLAAATMVSDSIEEWDESFAWKIPDFVAYATLPPETQLILVSGSN 399
>At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein
similar to 1,4-alpha-glucan branching enzyme [Solanum
tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme
(EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum
tuberosum} SP|P30924; contains Pfam profiles: PF00128
Alpha amylase catalytic domain, PF02922 Isoamylase
N-terminal domain
Length = 777
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 371 SEPR---FEEIKKEVSSYIKKIGYNPAAVAFVP 460
SEP+ FEE K+V ++K+ GYN + VP
Sbjct: 257 SEPKVSTFEEFTKKVLPHVKRAGYNAIQLIGVP 289
>At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5)
Monovalent cation:proton antiporter family 2 (CPA2
family) member, PMID:11500563; related to
glutathione-regulated potassium-efflux system protein
[Escherichia coli] GP|606284|gb|AAA58147
Length = 568
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 377 PRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNM 487
PRF ++ ++SS ++ Y AAVAF +S W D +
Sbjct: 354 PRFLKLMIQLSSQTNEL-YQLAAVAFCLLSAWCSDKL 389
>At5g19490.1 68418.m02322 repressor protein-related similar to
repressor protein [Oryza sativa] GI:18481624
Length = 236
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 668 TVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR 564
T + + +TSC RRG GR+ GR S S++
Sbjct: 92 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSLK 126
>At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 442
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 353 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 466
+TE + P+ E K E+S++I IG+ V F P S
Sbjct: 63 ATEKESTPPKKIEYKPEISNWINLIGFVEQPVQFGPCS 100
>At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 440
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 353 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 466
+TE + P+ E K E+S++I IG+ V F P S
Sbjct: 63 ATEKESTPPKKIEYKPEISNWINLIGFVEQPVQFGPCS 100
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 709 YLVSTHQFQLCRRARYQYHRFCIRLA 632
Y + +HQF C++ Y H C L+
Sbjct: 334 YPIVSHQFYHCKKCNYSLHEVCAGLS 359
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 538 KEGKADGKCLIEALDAILPPARPTDKP 618
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 538 KEGKADGKCLIEALDAILPPARPTDKP 618
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,733,300
Number of Sequences: 28952
Number of extensions: 397491
Number of successful extensions: 1377
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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