Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20681
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    44   2e-05
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    44   3e-05
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   4.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.5  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   4.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   5.9  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +1

Query: 544 NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDP 678
           + KGIP+FW    +NV  LSEM+   DE  L  L DI++   E P
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP 204



 Score = 33.9 bits (74), Expect = 0.022
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +2

Query: 257 RIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPW 436
           RI  LR LQK + D+E++F  E+                 R+ +V G  EP ++E     
Sbjct: 78  RISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEEIKKGE 137

Query: 437 RDDTEEEE 460
             D  E++
Sbjct: 138 AADENEKK 145


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +1

Query: 541 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 657
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 82  ERSTVPIFNISLSPPSKFSEKKDG 11
           ERS  P  ++S+S PS F +K+DG
Sbjct: 545 ERSLKPHTSLSISFPSDFLKKEDG 568


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 465 LGRYKMLPSLRVRKRG*QGYRASNGSQCKGYPRLLVQHIQEC 590
           L  +  LP+ R   R    YR SNG   + Y  L V+ IQ C
Sbjct: 473 LTNFSHLPTARSVSRT---YRLSNGKSIQYYSTLFVRLIQSC 511


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 263 GFATNIWG*GCHRFCMKAICDGRYHFITG--HATFQQVL 153
           G A++IW  GC  F M A   G+  F+ G  + TFQ +L
Sbjct: 290 GTASDIWAFGCILFQMLA---GKPPFVAGNEYLTFQSIL 325


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 156  HLLKSGVTRNEMIAAITNRLHAEAMASLP 242
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = -3

Query: 264  RIRHEHLGVGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTPFRMCGRH 85
            RI+H  L    P LL   DL   +   YG       ++  HH        Q P R+    
Sbjct: 1916 RIKHLELQYVSPKLLDACDLELAVPGTYGHNKPVIRISHFHHTFEVISSKQRPRRLTIHG 1975

Query: 84   QNVRRYPYLI-FHSHRRQN 31
             + + Y Y++  H   RQ+
Sbjct: 1976 SDGKDYQYVLKGHEDLRQD 1994


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,371
Number of Sequences: 5004
Number of extensions: 53203
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)