Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20681
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 54 1e-07
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 50 2e-06
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 50 2e-06
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 46 2e-05
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 42 6e-04
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 38 0.008
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 4.6
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 6.1
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +1
Query: 538 DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687
D + KG+PDFW + +LSE +QE DEP LK L+DIK +DP F
Sbjct: 128 DADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGF 177
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +1
Query: 532 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687
P+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP F
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGF 253
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +1
Query: 529 PPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687
P KG+P+FW N +N +LSE +QE DE LK L+DIK +P F
Sbjct: 122 PAEQKEEKGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGF 174
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 242 PKCSWRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE 406
PK R+ LR +Q + D+EAKF+ E A R IVNG E
Sbjct: 55 PKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVNGVVE 109
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +1
Query: 550 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687
KG+PDFW +N +L+E + E DE LK L+DIK +DP F
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGF 148
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +1
Query: 547 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 675
+K IPDFW F + ML E++ E D+ I K L+ I V ED
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSED 114
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 547 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 675
++ IPDFW F + +LSE++ E D+ + K L+ + V +D
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKD 119
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 380 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 502
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 237 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 106
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,377,080
Number of Sequences: 37544
Number of extensions: 352780
Number of successful extensions: 811
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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