Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20681
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_50799| Best HMM Match : I-set (HMM E-Value=0)                       29   2.7  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               29   2.7  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   4.7  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   6.2  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   8.3  
SB_37406| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)                     28   8.3  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +1

Query: 508 EDDKAIEPPMDP-NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV 660
           +D++ IE    P + KGIP+FW    +NV +LSEM+QEHDEPILK L D++V
Sbjct: 223 DDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRV 274



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 287 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELA 466
           E   +E KFY EVHA               R  I +G  EP D+EC   W  D E+E+ A
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEA 198

Query: 467 RAVQNAAITE 496
              +    TE
Sbjct: 199 EEKEEKEATE 208


>SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 434 WRDDTEEEELARAVQNAAITEGEEKR-MTRLSSL 532
           W+++ EE+E  R   +   TEGEE+  M RLS L
Sbjct: 103 WKEEEEEDEAERESMDNTNTEGEEEEGMERLSDL 136


>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1195

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 191 DSGHHKSPSCRSDGIPTPKCSWRIRALRTLQKEFVDIE 304
           + G +   SC++ G PTPK  W  + +    +E V +E
Sbjct: 744 ERGSNVQLSCQASGDPTPKYKWTYKGVPISPRENVQLE 781


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 517 KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 627
           + I+PP+ P  K +PD   ++ R  + LS  + EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 240 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 142
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 398 TYEPNDDECLNPWRDDTEEEEL 463
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 401 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 496
           +  N D+C+N   +  T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500


>SB_37406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 434 WRDDTEEEELARAVQNAAITEGEEKR-MTRLSSL 532
           W+++ +E+E  R   +   TEGEE+  M RLS L
Sbjct: 37  WKEEEDEDEAERESIDNPNTEGEEEEGMERLSDL 70


>SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)
          Length = 401

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 434 WRDDTEEEELARAVQNAAITEGEEKR-MTRLSSL 532
           W+++ +E+E  R   +   TEGEE+  M RLS L
Sbjct: 309 WKEEEDEDEAERESIDNPNTEGEEEEGMERLSDL 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,182,738
Number of Sequences: 59808
Number of extensions: 426981
Number of successful extensions: 1116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)