Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20681
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   4.2  
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%)
 Frame = +1

Query: 538 DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687
           DP+ KGI DFW    R   +++E ++EHD PIL  L D+     +DP  F
Sbjct: 107 DPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGF 156



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +2

Query: 257 RIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPW 436
           R+ AL+ LQ + + IE+ FY  VH                R  IV G  EP  ++   P 
Sbjct: 29  RVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPI 88

Query: 437 RDDTEEEELARAVQNA 484
            +  E ++LA   + A
Sbjct: 89  LEGLEGDQLAELYKAA 104


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 577  IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 684
            IF  V +  + +  +  P+L  L  ++V  H+DP S
Sbjct: 1145 IFEQVRLEKDRLPANSYPVLSKLSTVRVSQHDDPTS 1180


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 334 ECMYFTVKLGLNVDKLL 284
           EC++ + K GLNVDK+L
Sbjct: 188 ECLHISAKSGLNVDKVL 204


>AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical
           protein Y51H7BM.1 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 580 ICCTKSLGYPLHW 542
           +CC K LGYP +W
Sbjct: 52  LCCEKELGYPSNW 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,709,759
Number of Sequences: 27780
Number of extensions: 309471
Number of successful extensions: 955
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)