Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20681
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.68 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 218 CRSDGIPTPKCSWRIRALRTLQKEFVDIE 304
           C++DG P P+ +W+ +A      ++ D++
Sbjct: 700 CKADGFPKPQVTWK-KAAGDTPGDYTDLK 727



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 218  CRSDGIPTPKCSWRIR 265
            C + G+P P+ +W++R
Sbjct: 1298 CLAVGVPAPEVTWKVR 1313



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 218 CRSDGIPTPKCSWRIRALRTLQKEFVDI 301
           C + G PTP+ +W +   R    E + +
Sbjct: 415 CVASGNPTPEITWELDGKRLSNTERLQV 442


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 419 ECLNPWRDDTEEEELA 466
           + L  W DD++EEEL+
Sbjct: 34  QMLGIWADDSDEEELS 49


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 451 FSVITPWVETFIIIRFICAIHN 386
           +  ITP ++  + I   C +HN
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 543 GIHWRLDSLVILFSSPSVMAAFCTARA 463
           G+ W L  L +LF++  +  +FC   A
Sbjct: 132 GLGWLLLMLYLLFATLPLRLSFCVVLA 158


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 401 YEPNDDECLNPWRDDTEEEELARAVQNAAITEG 499
           ++P D+EC          E   R   N+ IT G
Sbjct: 199 WQPEDEECTEATAGAVVLETCQRNSNNSTITAG 231


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 209 SPSCRSDGIPTPKCSWRI 262
           S  C + G PTP+ +W +
Sbjct: 440 SLKCSAAGNPTPQVTWAL 457


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 209 SPSCRSDGIPTPKCSWRI 262
           S  C + G PTP+ +W +
Sbjct: 440 SLKCSAAGNPTPQVTWAL 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,533
Number of Sequences: 438
Number of extensions: 3396
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)