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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20681
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    45   6e-05
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    44   1e-04
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    40   0.001
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    37   0.011
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    35   0.045
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    30   1.3  
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,...    29   2.9  
At1g02330.1 68414.m00178 expressed protein contains similarity t...    28   6.8  
At2g26530.1 68415.m03183 expressed protein                             27   8.9  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +1

Query: 508 EDDKAIEPPMDPNV--KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI 681
           EDD  ++   +     KG+P FW    +N  ++SE + E DE  LK L+DIK    E+P 
Sbjct: 109 EDDTKVDQGEEKTAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPK 168

Query: 682 SF 687
            F
Sbjct: 169 GF 170



 Score = 35.1 bits (77), Expect = 0.045
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +2

Query: 239 TPKCSWRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE---- 406
           TP    R+ ALR +Q +  ++EAKF  E                  R  IVNGT E    
Sbjct: 48  TPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELA 107

Query: 407 PNDDECLNPWRDDTEEEE 460
           P DD  ++   + T EE+
Sbjct: 108 PEDDTKVDQGEEKTAEEK 125


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 550 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687
           KG+PDFW    +N  + +E + E DE  LK L+DIK    E+P  F
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGF 169


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +1

Query: 550 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687
           KG+P FW    +N  ++SE + E DE  L  L+DIK    E+P  F
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGF 169


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 547 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 675
           +K IPDFW   F +   L E++ E D+ I K L  + V+  +D
Sbjct: 70  IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKD 112


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 550 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 675
           +G+P+FW    +   ML+  + E DE  LK L+DI+    ED
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVED 167


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 207 NRLHAEAM-ASLPPNVRGESAP*ELFRRSLSTLRPSFTVKYMHSNANMKNFTSLFMKNE 380
           N+ H++    + PPN R + AP   F   ++  RP+F V+ +H  A   + T L  K E
Sbjct: 48  NQQHSQYHNTNFPPNYRRDRAPSSGFSPPVTRARPNFIVQLLHP-AAANSDTKLSKKQE 105


>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 848

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 383 LIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKRMTRLSSL 532
           ++  G     +DE L PW  + EE+   R V    +    +KR  R  SL
Sbjct: 190 MLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAV-MQKRRARAPSL 238


>At1g02330.1 68414.m00178 expressed protein contains similarity to
           hepatocellular carcinoma-associated antigen 59
           GI:7158847 from [Homo sapiens]
          Length = 279

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 449 EEEELARAVQNAAITEGEEKRMTRLSSLQWI 541
           EEEE    V  AAI+E EEKR   L  ++++
Sbjct: 13  EEEEEDNDVNKAAISEEEEKRRLALEEVKFL 43


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 330 HSNANMKNFTSLFMKNEXXXXXXXXXXXXXNVSTHGVMTLKKKS 461
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,760
Number of Sequences: 28952
Number of extensions: 283933
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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