BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20681 (692 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 45 6e-05 At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 44 1e-04 At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 40 0.001 At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 37 0.011 At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 35 0.045 At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 30 1.3 At3g18390.1 68416.m02339 expressed protein contains Pfam domain,... 29 2.9 At1g02330.1 68414.m00178 expressed protein contains similarity t... 28 6.8 At2g26530.1 68415.m03183 expressed protein 27 8.9 >At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 372 Score = 44.8 bits (101), Expect = 6e-05 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = +1 Query: 508 EDDKAIEPPMDPNV--KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI 681 EDD ++ + KG+P FW +N ++SE + E DE LK L+DIK E+P Sbjct: 109 EDDTKVDQGEEKTAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPK 168 Query: 682 SF 687 F Sbjct: 169 GF 170 Score = 35.1 bits (77), Expect = 0.045 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Frame = +2 Query: 239 TPKCSWRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE---- 406 TP R+ ALR +Q + ++EAKF E R IVNGT E Sbjct: 48 TPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELA 107 Query: 407 PNDDECLNPWRDDTEEEE 460 P DD ++ + T EE+ Sbjct: 108 PEDDTKVDQGEEKTAEEK 125 >At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 379 Score = 43.6 bits (98), Expect = 1e-04 Identities = 20/46 (43%), Positives = 27/46 (58%) Frame = +1 Query: 550 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687 KG+PDFW +N + +E + E DE LK L+DIK E+P F Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGF 169 >At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), putative similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 374 Score = 40.3 bits (90), Expect = 0.001 Identities = 19/46 (41%), Positives = 26/46 (56%) Frame = +1 Query: 550 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 687 KG+P FW +N ++SE + E DE L L+DIK E+P F Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGF 169 >At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family protein similar to SP|Q01105|SET protein (HLA-DR associated protein II) (PHAPII) (Phosphatase 2A inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 256 Score = 37.1 bits (82), Expect = 0.011 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +1 Query: 547 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 675 +K IPDFW F + L E++ E D+ I K L + V+ +D Sbjct: 70 IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKD 112 >At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family protein similar to nucleosome assembly protein 1 [Glycine max] GI:1161252; contains Pfam profile PF00956: Nucleosome assembly protein (NAP) Length = 329 Score = 35.1 bits (77), Expect = 0.045 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +1 Query: 550 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 675 +G+P+FW + ML+ + E DE LK L+DI+ ED Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVED 167 >At4g01020.1 68417.m00137 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF01485: IBR domain Length = 1787 Score = 30.3 bits (65), Expect = 1.3 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 207 NRLHAEAM-ASLPPNVRGESAP*ELFRRSLSTLRPSFTVKYMHSNANMKNFTSLFMKNE 380 N+ H++ + PPN R + AP F ++ RP+F V+ +H A + T L K E Sbjct: 48 NQQHSQYHNTNFPPNYRRDRAPSSGFSPPVTRARPNFIVQLLHP-AAANSDTKLSKKQE 105 >At3g18390.1 68416.m02339 expressed protein contains Pfam domain, PF04581: Protein of unknown function (DUF578) Length = 848 Score = 29.1 bits (62), Expect = 2.9 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +2 Query: 383 LIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKRMTRLSSL 532 ++ G +DE L PW + EE+ R V + +KR R SL Sbjct: 190 MLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAV-MQKRRARAPSL 238 >At1g02330.1 68414.m00178 expressed protein contains similarity to hepatocellular carcinoma-associated antigen 59 GI:7158847 from [Homo sapiens] Length = 279 Score = 27.9 bits (59), Expect = 6.8 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +2 Query: 449 EEEELARAVQNAAITEGEEKRMTRLSSLQWI 541 EEEE V AAI+E EEKR L ++++ Sbjct: 13 EEEEEDNDVNKAAISEEEEKRRLALEEVKFL 43 >At2g26530.1 68415.m03183 expressed protein Length = 317 Score = 27.5 bits (58), Expect = 8.9 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +3 Query: 330 HSNANMKNFTSLFMKNEXXXXXXXXXXXXXNVSTHGVMTLKKKS 461 H+ ++K FTSLF K E +VS H + KK+ Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,715,760 Number of Sequences: 28952 Number of extensions: 283933 Number of successful extensions: 729 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 707 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 729 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1477286152 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -