Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20680
         (722 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4V8V5 Cluster: Zgc:114123; n=5; Danio rerio|Rep: Zgc:1...    33   7.1  
UniRef50_Q246A9 Cluster: ARID/BRIGHT DNA binding domain containi...    33   7.1  
UniRef50_A6RCI4 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  
UniRef50_Q28J92 Cluster: UPF0439 protein C9orf30 homolog; n=3; T...    33   9.4  
UniRef50_Q96H12 Cluster: UPF0439 protein C9orf30; n=11; Amniota|...    33   9.4  

>UniRef50_Q4V8V5 Cluster: Zgc:114123; n=5; Danio rerio|Rep:
           Zgc:114123 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 555

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 248 VCGICCLIIEMFFRRHKFC*NHRLIFCHGCCLS*RI---HFISL*LFNYK 108
           VC  CC +  ++F  H  C   R + C GCC+  R+   H ++L L  +K
Sbjct: 427 VCS-CCAMRSLYFTWHNVCSVCRRVVCPGCCVEMRLPSQHCVNLPLSFFK 475


>UniRef50_Q246A9 Cluster: ARID/BRIGHT DNA binding domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           ARID/BRIGHT DNA binding domain containing protein -
           Tetrahymena thermophila SB210
          Length = 651

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -3

Query: 252 FCLWHLLPYY*NVFSPPQVLLESSSHLLSWVLPFLKNSFYITVAL*L*THL-EL*TKVLK 76
           F L  LL Y  +V S  Q  LES +HLL  ++ +L+       +L     L E+  + L+
Sbjct: 250 FALNQLLLY--SVNSMHQFTLESYNHLLEGIVQYLEEIIKNVPSLNKILQLKEIKPRTLQ 307

Query: 75  RFGGTSSYSIVG 40
            +GGTS YS  G
Sbjct: 308 EYGGTSDYSYSG 319


>UniRef50_A6RCI4 Cluster: Putative uncharacterized protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Putative
           uncharacterized protein - Ajellomyces capsulatus NAm1
          Length = 921

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 325 IAASTKMGKLKERYGNIRNNLSKAGG 402
           +AA ++  +L +RY NIRN + KAGG
Sbjct: 774 VAAESRQRQLVDRYNNIRNKIVKAGG 799


>UniRef50_Q28J92 Cluster: UPF0439 protein C9orf30 homolog; n=3;
           Tetrapoda|Rep: UPF0439 protein C9orf30 homolog - Xenopus
           tropicalis (Western clawed frog) (Silurana tropicalis)
          Length = 365

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 254 MKEQAWQTLVNDFNSSIRRFPRTPSQLRLKWENLKNAT 367
           +K++ WQ L +++NS      R   QL+  WEN+K  T
Sbjct: 44  LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKART 81


>UniRef50_Q96H12 Cluster: UPF0439 protein C9orf30; n=11;
           Amniota|Rep: UPF0439 protein C9orf30 - Homo sapiens
           (Human)
          Length = 275

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 254 MKEQAWQTLVNDFNSSIRRFPRTPSQLRLKWENLKNAT 367
           +K++ WQ L +++NS      R   QL+  WEN+K  T
Sbjct: 44  LKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKART 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,749,426
Number of Sequences: 1657284
Number of extensions: 11174700
Number of successful extensions: 23947
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23943
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)