Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20680
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   1.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.7  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   4.7  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   6.3  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 526  CPYASLHFFSSILFPLGCISVKNIICDLQQCFIQNFI 416
            C Y      ++ L+P GC  +K ++  L++C +  FI
Sbjct: 1206 CRYRQFDSLTASLYPEGCYQLKPVLEWLKRCILSIFI 1242


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 526  CPYASLHFFSSILFPLGCISVKNIICDLQQCFIQNFI 416
            C Y +    ++ L+P GC  +K ++  +++C I  FI
Sbjct: 1298 CDYQAGAAINASLYPPGCYMLKPVLDWIRRCIISIFI 1334


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 44  TILYDDV--PPKRFKTFVYNSKCVYN*RAT 127
           T+L+D++  PP +F+T  YN   VY  RAT
Sbjct: 747 TVLHDEIQMPPDQFQTLCYNLCYVYA-RAT 775


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 469 SVKNIICDLQQCFIQNF-ICNPYHLQPY*G 383
           +VK  ICD      + + ICNP  L PY G
Sbjct: 509 TVKEAICDYNSDTSRTWDICNPNKLHPYSG 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,165
Number of Sequences: 5004
Number of extensions: 51402
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)