Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20680
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0444 + 17816207-17817436                                         32   0.40 
07_03_0999 - 23216665-23217419,23217626-23217956                       32   0.40 
06_03_0334 - 19660526-19661755                                         32   0.40 
03_01_0487 - 3704763-3705416                                           31   0.70 
05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912...    29   3.7  
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433...    28   8.6  

>11_04_0444 + 17816207-17817436
          Length = 409

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 251 KMKEQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 358
           K  EQ W+ +  +FNS++      R P Q R  W+N+K
Sbjct: 188 KKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 225


>07_03_0999 - 23216665-23217419,23217626-23217956
          Length = 361

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 251 KMKEQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 358
           K  EQ W+ +  +FNS++      R P Q R  W+N+K
Sbjct: 119 KKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 156


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 251 KMKEQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 358
           K  EQ W+ +  +FNS++      R P Q R  W+N+K
Sbjct: 188 KKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 225


>03_01_0487 - 3704763-3705416
          Length = 217

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 251 KMKEQAWQTLVNDFNSSIRR--FPRTPSQLRLKWENLKNATA 370
           K  E  W+ + ++FNS++ R    RT  Q++  W+N+K   A
Sbjct: 119 KKSEYYWKDVADEFNSNMPRNAHTRTVKQMKTHWDNVKRDIA 160


>05_03_0169 -
           9123684-9124823,9125408-9125594,9126379-9126476,
           9127124-9127182,9128748-9129081
          Length = 605

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 21  VCFSIVYLLYYMMTCLQNALKLSFIILSVFIIKELQ*YKMNSSRKAAPMTKDETMILAEL 200
           + F  V +   MMT    AL +   +LS F++K L            P T+ E M L   
Sbjct: 42  IVFCFVGMRIQMMTGFVPALNMPVTVLSFFLLKVLARQLQKWRLTVVPFTRQENMFLITC 101

Query: 201 V 203
           V
Sbjct: 102 V 102


>05_04_0149 -
           18441561-18442082,18442723-18442861,18443295-18443352,
           18443630-18443664,18444528-18444886,18445304-18445450,
           18445849-18447954,18448300-18448494,18448629-18448709,
           18448758-18448874,18449281-18449370,18449466-18449552,
           18450293-18450315,18450675-18450804
          Length = 1362

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 248 VCGICCLIIEMFFRRHKFC*NHRLIFCHGC 159
           +C  C L   +  +RH  C N  L+FCH C
Sbjct: 733 MCSGCRLPFNLRRKRHN-CYNCALVFCHAC 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,268
Number of Sequences: 37544
Number of extensions: 308426
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)