Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20680
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)                   32   0.54 
SB_53605| Best HMM Match : Ribosomal_L36 (HMM E-Value=1.5)             28   6.7  
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
          Length = 375

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = -2

Query: 580 LYFPSQVSFWLLDILLMHCPYASLHFFSSILFPL---GCISVKNI-ICDLQQCFIQN--- 422
           L FP Q++  L  + +   PY  LHFF     PL    C+S + + + DL Q    N   
Sbjct: 145 LRFPGQLNADLRKLAVNMIPYPRLHFFMPGFAPLTSRECVSYRALTVADLTQAIFDNKNL 204

Query: 421 -FICNP 407
              CNP
Sbjct: 205 LIACNP 210


>SB_53605| Best HMM Match : Ribosomal_L36 (HMM E-Value=1.5)
          Length = 251

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +2

Query: 290 FNSSIRRFPRTPSQLRLKWENLKNATAT*ETTLVRLEVVRIADEILNKALL*VTYNIFNT 469
           FN+ ++RF  + S L +K  N +  +   +  L+R ++   + + L+K  L   + IF  
Sbjct: 10  FNTFLKRFEYSTSALAIKAANNQFTSGGPDGNLIRSKLSVTSSKKLSKNTLLFNFEIFFA 69

Query: 470 YTAKR 484
           ++ K+
Sbjct: 70  FSVKK 74


>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 538 LLMHCPYASLHFFSSILFPLGCISV 464
           ++ H P+ S HFF+ + FP+  I+V
Sbjct: 734 IIPHEPFTSGHFFTLVSFPMAAITV 758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,326,258
Number of Sequences: 59808
Number of extensions: 364526
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)