Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20680
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38250.1 68415.m04697 DNA-binding protein-related contains si...    31   1.0  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    29   2.4  
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ...    29   3.1  
At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    28   5.5  
At1g55210.1 68414.m06306 disease resistance response  protein-re...    28   7.2  

>At2g38250.1 68415.m04697 DNA-binding protein-related contains
           similarity to DNA-binding protein GI:170271 from
           [Nicotiana tabacum]
          Length = 289

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 251 KMKEQAWQTLVNDFNSSIRRFPRTPSQLRLKWENL 355
           K  +  W+ + N      + FPR+P Q + KW+NL
Sbjct: 65  KRNKLLWEVISNKMRD--KSFPRSPEQCKCKWKNL 97


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 233 NKCHKQKMKEQAWQTLVNDFNSSIRRFPRTPSQLRLK 343
           N+ +KQK      +TLVN+  S+ R  P +  ++RL+
Sbjct: 2   NEVNKQKENRDGHETLVNEEGSAARTRPTSVEEIRLR 38


>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
           protein low similarity to poly(A) binding protein II
           from [Xenopus laevis] GI:11527140, [Mus musculus]
           GI:2351846, [Bos taurus] GI:1051125; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) domain
          Length = 537

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 330 CDGVRGKRRIDELKSFTRVCQACSFIFCLWHLLPYY 223
           C+G   ++  ++L++F +  Q+  F+ CLW LL  Y
Sbjct: 50  CNGKSQRQASEDLEAFLKE-QSWKFVVCLWELLVKY 84


>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 354 KFSHFSRSCDGVRGKRRIDELKSFTRVCQACSFIF 250
           K + FS  C   R  R + +LKS  RV +AC  +F
Sbjct: 573 KMATFSTRCRN-RNHRMLKKLKSMDRVSKACRLVF 606


>At1g55210.1 68414.m06306 disease resistance response
           protein-related/ dirigent  protein-related smimilar to
           dirigent protein [Thuja plicata] gi|6694699|gb|AAF25360;
           similar to pathogenesis-related protein [Pisum sativum]
           gi|4585273|gb|AAD25355
          Length = 187

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 296 SSIRRFPRTPSQLRLKWENLKNATAT*E 379
           S + RF R   + R KW NLKN  AT E
Sbjct: 152 SGLFRFARGYVEARTKWINLKNGDATVE 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,103,113
Number of Sequences: 28952
Number of extensions: 262047
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)