Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20679
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   155   5e-39
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   5.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.0  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   7.0  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   7.0  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   7.0  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.3  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   9.3  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   9.3  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   9.3  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  155 bits (377), Expect = 5e-39
 Identities = 80/177 (45%), Positives = 116/177 (65%), Gaps = 4/177 (2%)
 Frame = +2

Query: 257 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 436
           MV++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H 
Sbjct: 51  MVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHY 110

Query: 437 NRNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKLQSSGEMENFGGQDQIQKHR 616
            +  EE+GAGDQG+MFGYATDET         L      KL ++  +    G     +  
Sbjct: 111 EKALEELGAGDQGIMFGYATDETPEKLP----LTILLAHKLNAAMSVARRDGSLPWLRPD 166

Query: 617 LLANMYLLVVQQS----PQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPHNIL 775
               + +   +++    P+RV T+VVS QH++ I+ E LR EI EK+IK  +P ++L
Sbjct: 167 TKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLL 223



 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = +3

Query: 120 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 254
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +KT
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKT 49



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = +1

Query: 514 MPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 657
           +PLT++LAHKLN  ++  RR+G   W RPD+KTQVT EY    GA +P
Sbjct: 137 LPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 170  RPNKRRYSRRAPESGSGRKSCM 235
            +P KR+Y+R+AP   S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 24  WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 194
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = -1

Query: 507 SVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPLDESS*PICL 328
           SVSS +       +P  TSSS+L S +  +      SS+S TL    S  L  SS P   
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSLSTSSIPSTS 244

Query: 327 TVSRTT 310
           + S +T
Sbjct: 245 SSSSST 250


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 391 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 266
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 287 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 406
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 597 TRFKNTGYLRICICWWCNSPHR 662
           T   N GYLR C+ +  NSP R
Sbjct: 252 TYLHNNGYLRKCLTFVPNSPER 273


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 176 LVAHFVWMTLANRFRCEQKY*SIFHII 96
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -2

Query: 611 VFESGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHFL 504
           +F  G A++  N+PF +S +++  S   +T ++G+H +
Sbjct: 184 LFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHII 221


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 422 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 303
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 156 PDKMCDQISDAILDA-HLNQDPDAKVACETITK 251
           P K  ++  D ++ + H N DPDAK+A   ++K
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSK 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,549,329
Number of Sequences: 5004
Number of extensions: 79194
Number of successful extensions: 249
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)