Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20679
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 128 4e-30
01_02_0051 - 10655867-10657057 126 3e-29
01_03_0090 - 12347165-12348349 124 1e-28
12_02_0655 + 21588662-21589051 31 1.0
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 30 2.4
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 29 3.2
02_01_0375 + 2712289-2712957 29 4.2
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339... 28 7.3
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 28 7.3
05_07_0356 + 29529422-29529517,29529613-29530200 28 7.3
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 28 9.6
>05_01_0264 + 2030080-2031270
Length = 396
Score = 128 bits (310), Expect = 4e-30
Identities = 72/175 (41%), Positives = 102/175 (58%), Gaps = 2/175 (1%)
Frame = +2
Query: 257 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 436
MV++ GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH
Sbjct: 53 MVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHG 112
Query: 437 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKLQSSGEMENFGGQDQIQK 610
+ + EE+GAGDQG MFGYATDET L T +L + K
Sbjct: 113 HFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGK 172
Query: 611 HRLLANMYLLVVQQSPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPHNIL 775
++ + P RVHTV++S QH E +T + + +++E VIK VIP L
Sbjct: 173 TQVTVEYRNESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYL 227
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/45 (80%), Positives = 41/45 (91%)
Frame = +3
Query: 120 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 254
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKT 51
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = +1
Query: 514 MPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 657
MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP
Sbjct: 141 MPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVP 188
>01_02_0051 - 10655867-10657057
Length = 396
Score = 126 bits (303), Expect = 3e-29
Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Frame = +2
Query: 257 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 436
MV++ GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH
Sbjct: 53 MVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHG 112
Query: 437 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTN---SIRKLQSSGEMENFGGQDQ 601
+ + EE+GAGDQG MFGYATDET L T + +++ +G +
Sbjct: 113 HFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGK 172
Query: 602 IQKHRLLANMYLLVVQQSPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPHNIL 775
Q N +V P RVHTV++S QH E +T + + +++E VIK VIP L
Sbjct: 173 TQVTVEYQNDNGAMV---PLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYL 227
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = +3
Query: 102 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 254
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKT 51
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = +1
Query: 514 MPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 657
MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP
Sbjct: 141 MPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVP 188
>01_03_0090 - 12347165-12348349
Length = 394
Score = 124 bits (298), Expect = 1e-28
Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Frame = +2
Query: 257 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 436
MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH
Sbjct: 52 MVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHG 111
Query: 437 N--RNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKLQSSGEMENFGGQDQIQK 610
+ + EE+GAGDQG MFGYATDET L T +L + K
Sbjct: 112 HFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGK 171
Query: 611 HRLLANMYLLVVQQSPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPHNIL 775
++ P RVHTV++S QH E +T + + +++E VIK VIP L
Sbjct: 172 TQVTVEYLNDAGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPDKYL 226
Score = 85.0 bits (201), Expect = 6e-17
Identities = 37/45 (82%), Positives = 41/45 (91%)
Frame = +3
Query: 120 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 254
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKT 50
Score = 58.0 bits (134), Expect = 8e-09
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +1
Query: 514 MPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 657
MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY+ GA VP
Sbjct: 140 MPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAMVP 187
>12_02_0655 + 21588662-21589051
Length = 129
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +2
Query: 68 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRAPESGSGRK 226
WI QR ++ G W RGS V P +RR SRR P SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 536 ASTTVNGMHFLSHLLHNRTSSPGLLPQLPRHFCSHAPQ 423
+S+ +NG +L +SS G L QLPR+F S P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +2
Query: 593 QDQIQKHRLLANMYLLVVQQSP---QRVHTVVVS----LQHSEKITLETLRDEIREKVIK 751
Q Q Q+ + + VVQQ+ QRV TV VS LQH T E R +RE+V
Sbjct: 329 QQQQQQRAPMQQQRMPVVQQAAPRKQRVFTVTVSRAYALQHQRGSTPEERRASVRERVRL 388
Query: 752 EV 757
E+
Sbjct: 389 EL 390
>02_01_0375 + 2712289-2712957
Length = 222
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 526 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 633
VV +L++ + +++G WW RPDS EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
>12_02_0952 -
24731799-24731901,24732169-24732231,24732941-24733980,
24734094-24734339
Length = 483
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 512 HFLSHLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVI 405
H + LLH R LLP++ RHF H QQQ +++
Sbjct: 92 HAAAPLLHRRI----LLPEVDRHFKPHRCQQQRVMV 123
>07_03_0755 -
21261855-21261945,21262277-21262323,21262819-21263014,
21263239-21263340,21263602-21263678,21264037-21264236,
21264324-21264681,21265245-21265301,21265434-21266192,
21266287-21266468,21266651-21266813
Length = 743
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = +2
Query: 548 IRKLQSSGEMENFGGQDQIQKHRLLANMYLLVVQQSPQRVHTVVVSLQHSEKITLETLRD 727
+++ Q + E G QD++ +L + +L VQQ + + + + + ++D
Sbjct: 275 VQQQQQQQQQEQSGQQDKLSFKGVLEKLKMLSVQQRKSTFYANATETESIDAYSCKDVQD 334
Query: 728 EIREKVIKEV 757
++ E + EV
Sbjct: 335 DLPENLDSEV 344
>05_07_0356 + 29529422-29529517,29529613-29530200
Length = 227
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 522 QRHAFSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSAS 388
Q H S +S++ SP P+ S + SC+P A G S+S
Sbjct: 67 QAHLISPASISASGGGSPSPTPSPRSLITSCSPTAAAGSSAGSSS 111
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = -2
Query: 545 SLCASTTVNGMHFLSHLLHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVG------LVRAS 384
+LC S + +H LS L H G+LP + H P+ + I+ L+RAS
Sbjct: 86 ALC-SAILGALHKLSALPHIEEEHVGVLPSMVEAELPHLPEDLLVQILSRLEIPDLLRAS 144
Query: 383 HCMSCNQSLWTNHHN 339
S S +T H+
Sbjct: 145 SVCSSWHSAYTTLHS 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,236,837
Number of Sequences: 37544
Number of extensions: 528758
Number of successful extensions: 1441
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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