Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20679
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   4e-44
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             172   3e-43
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             152   3e-37
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   4e-19
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)        85   8e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             54   1e-07
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              35   0.085
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)              31   0.80 
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 31   1.1  
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     30   2.4  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  175 bits (425), Expect = 4e-44
 Identities = 85/173 (49%), Positives = 115/173 (66%)
 Frame = +2

Query: 257 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 436
           M+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+IA GVH 
Sbjct: 8   MIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDIAQGVHI 67

Query: 437 NRNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKLQSSGEMENFGGQDQIQKHR 616
            R+DE++GAGDQGLMFGYATDET+        L     ++L       +        K +
Sbjct: 68  GRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVRPDSKTQ 127

Query: 617 LLANMYLLVVQQSPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPHNIL 775
           +         +  P RVHT+V+S+QH   I L+ +R E+ + V+KEV+P   +
Sbjct: 128 VTVEYKFQGGKAVPLRVHTIVISVQHDPNIELDVMRKELMDYVVKEVVPEKYI 180



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 33/48 (68%), Positives = 37/48 (77%)
 Frame = +1

Query: 514 MPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 657
           MPLTVVLAH LN+++A+ RRNG   W RPDSKTQVT EY F GG  VP
Sbjct: 94  MPLTVVLAHGLNKRLADCRRNGSLPWVRPDSKTQVTVEYKFQGGKAVP 141


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  172 bits (418), Expect = 3e-43
 Identities = 88/173 (50%), Positives = 110/173 (63%)
 Frame = +2

Query: 257 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 436
           M+LLCGEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH 
Sbjct: 77  MILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHV 136

Query: 437 NRNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKLQSSGEMENFGGQDQIQKHR 616
            R +E+VGAGDQGLMFGYATDETE        L     +KL                K +
Sbjct: 137 GREEEDVGAGDQGLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQ 196

Query: 617 LLANMYLLVVQQSPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPHNIL 775
           +         +  P RVHT+V+S+QH   IT+E LR E+ EK++K V+P   L
Sbjct: 197 VTVEYKFEHGRAIPLRVHTIVISVQHDPTITMENLRKELMEKIVKTVVPSKFL 249



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/47 (87%), Positives = 44/47 (93%)
 Frame = +3

Query: 114 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 254
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KT
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKT 75



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 34/48 (70%), Positives = 38/48 (79%)
 Frame = +1

Query: 514 MPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 657
           MPLTVVLAHK+NQK+AE RR+G   WARPDSKTQVT EY F  G  +P
Sbjct: 163 MPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHGRAIP 210


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  152 bits (369), Expect = 3e-37
 Identities = 81/173 (46%), Positives = 106/173 (61%)
 Frame = +2

Query: 257 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 436
           +VLL GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q   IA  VH 
Sbjct: 98  LVLLFGEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHL 157

Query: 437 NRNDEEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKLQSSGEMENFGGQDQIQKHR 616
           NR D+E+GAGDQGLMFGYATDETE        L      +L    + +         K +
Sbjct: 158 NRRDDEIGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQ 217

Query: 617 LLANMYLLVVQQSPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPHNIL 775
           +  +  L      P+RVHTV++S QH+  + +E +R  ++E +I  VIP   L
Sbjct: 218 VTVDYRLERGACIPERVHTVLISTQHTPDVGIEEIRHHLKETIINHVIPEKYL 270



 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 41/53 (77%), Positives = 42/53 (79%)
 Frame = +3

Query: 96  YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 254
           Y   D   FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKT
Sbjct: 44  YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKT 96



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/48 (52%), Positives = 30/48 (62%)
 Frame = +1

Query: 514 MPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 657
           MPLT VLAHKL  ++AE R+     W  PD KTQVT +Y    GA +P
Sbjct: 184 MPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYRLERGACIP 231


>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 40/47 (85%), Positives = 44/47 (93%)
 Frame = +3

Query: 114 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKT 254
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KT
Sbjct: 9   NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKT 55



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 27/34 (79%), Positives = 32/34 (94%)
 Frame = +2

Query: 257 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 358
           M+++CGEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 57  MIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSK 90


>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
          Length = 70

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +3

Query: 114 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 236
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 34/105 (32%), Positives = 56/105 (53%)
 Frame = +2

Query: 449 EEVGAGDQGLMFGYATDETENACR*L*CLHTNSIRKLQSSGEMENFGGQDQIQKHRLLAN 628
           E+ GAGDQGLMFGYAT+ET++    +      + R ++   E+   G    ++      +
Sbjct: 8   EDQGAGDQGLMFGYATNETDSL---MPAPVYYAHRLVERQSELRRNGTLPWLRPD--AKS 62

Query: 629 MYLLVVQQSPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIP 763
              +  +    +V  VV+S QH   I+L+ LR+ + E +IK V+P
Sbjct: 63  QVTINWEGDSPKVDAVVLSTQHDPSISLDDLREAVLENIIKPVLP 107



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +1

Query: 514 MPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEY 630
           MP  V  AH+L ++ +ELRRNG   W RPD+K+QVT  +
Sbjct: 30  MPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTINW 68


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 307 LIIHVSFGCDFATQ--KHHTVLVMVSHATFASGS*FRCASRIASLIWSHILSG 155
           L  H++F C       + H +   +S +  A  + FRC+ R  S++W H+ +G
Sbjct: 263 LTCHLNFACRVCRTYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315


>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 1   GTVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 132
           G VW  ++GL+ N E     K + T++ PT+ V++W + + F +H
Sbjct: 417 GQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 461


>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
          Length = 390

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 272 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 373
           GEITS  N+D +K+    +   K I YD    G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 1   GTVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 132
           G VW  ++GL+ N E     K + T++ PT+ V++W + + F +H
Sbjct: 71  GQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 115


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 494 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 396
           L N T+ P + PQ P H  SHA +   ++I G+
Sbjct: 99  LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +3

Query: 228 VACETITKTVWCFCVAKSHPKLTWII---KKLCAKRSNILVMMIRPK 359
           V C  IT T+W  C  +  P  T  +    KLC+    + V ++ P+
Sbjct: 599 VTCSPITWTIWLACRTRGMPVYTAFVMQHSKLCSMIRRLAVWIVEPE 645


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 45  MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 221
           MP      G +K N  + D  D   +L   +S+    + D++C   +  I  AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255


>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 45  MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 221
           MP  +   G +K N  + D  D   +L    S+    + D++C   +  I  AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,335,870
Number of Sequences: 59808
Number of extensions: 636143
Number of successful extensions: 1779
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)