Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20679
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.2  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   4.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 572 EMENFGGQDQIQKHRLLANMYLL 640
           ++ ++ G++ +  H+LL N Y L
Sbjct: 250 DLPDYRGEEYLYSHKLLLNRYYL 272


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 572 EMENFGGQDQIQKHRLLANMYLL 640
           ++ ++ G++ +  H+LL N Y L
Sbjct: 250 DLPDYRGEEYLYSHKLLLNRYYL 272


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 525 CSACTQTQSENCRAQAKW 578
           C  CT+ Q +N    A+W
Sbjct: 75  CKKCTEIQKQNLDKLAEW 92


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 120 ILIHLPYHNCVRWFSRIHSFLKSPAF 43
           I+ HL  H  V W+S+  +F   P +
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTY 198


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 525 CSACTQTQSENCRAQAKW 578
           C  CT+ Q +N    A+W
Sbjct: 75  CKKCTEIQKQNLDKLAEW 92


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 486 PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLH 376
           PN++P S    +++      P  M  D W+S  + LH
Sbjct: 57  PNVRPISSHQIANNVTMQLLPKLMEFDDWTSV-MELH 92


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 613 VFLNLVLPTKILHF 572
           VFL+L++P  IL+F
Sbjct: 14  VFLSLLIPALILYF 27


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 683 TRLQYELSVGTVAPPANTYS 624
           TRL++ + +  V  P +TYS
Sbjct: 354 TRLRWMMEIPNVTLPTSTYS 373


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 110 WISIFVHIGICWRGSSRQNVRPNKRR 187
           W+ + V +GI  +G +   VR N  R
Sbjct: 4   WLLLVVCLGIACQGITSVTVRENSPR 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,779
Number of Sequences: 438
Number of extensions: 5102
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)