Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20678
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 96 2e-20
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 93 2e-19
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 45 6e-05
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 30 1.3
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.7
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.9
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.9
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.9
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 6.8
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 27 8.9
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/95 (51%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 428
K+FSGK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRI
Sbjct: 86 KKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRI 141
Query: 429 RVKLDGSQLIKVHLDKNQQTTIEHKVEP-SSLYTR 530
R +LDG+++IK+ LD ++ E+K+E S++Y R
Sbjct: 142 RYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRR 176
Score = 76.2 bits (179), Expect = 2e-14
Identities = 38/80 (47%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Frame = +1
Query: 19 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 192
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 193 MPKLKAFQKIQIRLVRELEK 252
KAF+KI +RLVRELEK
Sbjct: 67 YRLRKAFKKIHVRLVRELEK 86
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 509 TFQSVYKKLTGREVTFEFP 565
TF +VY++L G++V FE+P
Sbjct: 169 TFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 92.7 bits (220), Expect = 2e-19
Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 428
K+FSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+
Sbjct: 99 KKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRV 154
Query: 429 RVKLDGSQLIKVHLDKNQQTTIEHKVEP-SSLYTR 530
R LDG +++K+ LD ++ E+K++ SS+Y R
Sbjct: 155 RYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRR 189
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/62 (51%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Frame = +1
Query: 73 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 246
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 247 EK 252
EK
Sbjct: 98 EK 99
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 509 TFQSVYKKLTGREVTFEFP 565
TF SVY++L G++V F++P
Sbjct: 182 TFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 419
K+FSGK VVF R+I+ +P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 71 KKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
Score = 34.7 bits (76), Expect = 0.059
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +1
Query: 127 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEK 252
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEK
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEK 71
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 345 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVEPSSLY 524
P +RTLT+ +D IL+D + A+I GK + + + +IK + +++ P +
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIKAGVISLLGKLVQYPERPGEPF 144
Query: 525 TR 530
R
Sbjct: 145 CR 146
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 396 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 503
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 79 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 213
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 79 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 213
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 28 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 204
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 205 KAFQKI 222
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 79 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 213
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 332 QTKEATLKDIDLCVRCYPRGLG 397
Q ++++LK CVRC+P G G
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTG 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,630,869
Number of Sequences: 37544
Number of extensions: 320427
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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