Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20678
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 111 3e-25
SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012) 29 2.3
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 2.3
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 5.2
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 5.2
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 9.1
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 111 bits (268), Expect = 3e-25
Identities = 53/80 (66%), Positives = 67/80 (83%)
Frame = +1
Query: 13 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 192
S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 193 MPKLKAFQKIQIRLVRELEK 252
+P+++AFQKIQ RLVRELEK
Sbjct: 68 VPQIRAFQKIQTRLVRELEK 87
Score = 49.6 bits (113), Expect(2) = 4e-10
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 353
K+FSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 87 KKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 509 TFQSVYKKLTGREVTFEFP 565
TF +VYKKLTG++V FEFP
Sbjct: 136 TFSTVYKKLTGKDVVFEFP 154
Score = 32.3 bits (70), Expect(2) = 4e-10
Identities = 14/23 (60%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +3
Query: 465 HLDKNQQTTIEHKVEP-SSLYTR 530
HLDK QQTTI+HK+E S++Y +
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKK 143
>SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012)
Length = 1119
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 40 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQK 219
+ + S + + ELE S+ + LRE+ + KE+E+ +++++ + P + +
Sbjct: 862 SRSSSVKDHVDGQRAELEDMSEERI-LREIEELRQKELEIQARRTMLEKMAAPTIASASS 920
Query: 220 IQIRLVRELEKNSVVNM*SLLET-VRSCLSPATKLVLLTNKRGHAQGH*PLCTM 378
+ + + +++KN V N + + V + LS + + G Q P +M
Sbjct: 921 LSRKELSDVKKNPVPNKIQMRKAPVINALSKPAAAAAPSRQPGPVQSTPPTSSM 974
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 29.5 bits (63), Expect = 2.3
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Frame = +1
Query: 4 VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 165
V+MS ++ +++SG +S E+ + E N+ LK +L E L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726
Query: 166 KKSIIIYVPMPKLKAFQKIQIRLVRELEK 252
K + +YV M KL++ Q ELEK
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEK 1755
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 279 VGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR-IRVKLDGSQL 455
+ DR+ + K + R+ + + TL V DA+ E+L P +++G R + K+
Sbjct: 517 MSDRRSMSKHGVQWRILSIYYTDTTVTLEEVKDAVKEELDGPGKLLGYRAMHKKIRQQHD 576
Query: 456 IKVHLDKNQQTTIEHKVEPSSLYTRS 533
+ V D +E ++P L RS
Sbjct: 577 LNVTRDLVHDVMLE--LDPEGLQNRS 600
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 49 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 216
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 101 PTSKPNFGSFTLQKLKKLNYTIRS 172
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +2
Query: 80 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 178
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 490 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 383
V+CW L + + + EP N L +L ++ GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,951,583
Number of Sequences: 59808
Number of extensions: 363207
Number of successful extensions: 915
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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