Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20678
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   110   7e-25
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  110 bits (265), Expect = 7e-25
 Identities = 49/87 (56%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
 Frame = +3

Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 425
           K+F G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L++LV+PAE+VG+R
Sbjct: 84  KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRR 143

Query: 426 IRVKLDGSQLIKVHLDKNQQTTIEHKV 506
           IRVKLDG ++ KVHLDK+ QT + HK+
Sbjct: 144 IRVKLDGKKVYKVHLDKSHQTNVGHKI 170



 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 45/78 (57%), Positives = 59/78 (75%)
 Frame = +1

Query: 19  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 198
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 199 KLKAFQKIQIRLVRELEK 252
           +LKAF KI   LVRELEK
Sbjct: 67  QLKAFHKIHPALVRELEK 84



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 506 GTFQSVYKKLTGREVTFEFPEP 571
           G F SVY+KLTG++VTFEFP+P
Sbjct: 171 GVFASVYRKLTGKDVTFEFPDP 192


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 83  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 193
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 4   VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 174
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 175 I 177
           +
Sbjct: 302 V 302


>Z69717-2|CAA93532.2|  204|Caenorhabditis elegans Hypothetical
           protein E01G6.2 protein.
          Length = 204

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/75 (22%), Positives = 35/75 (46%)
 Frame = +3

Query: 345 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVEPSSLY 524
           P+   +    D  +++ +F  E+    +   L   ++++ HLD    +      EP+S Y
Sbjct: 110 PKHARVVKKEDNSMKNCLFEKEVYDTMLSDSLRVCEMLQSHLDDCIVSVRAKSPEPTSSY 169

Query: 525 TRS*RDAK*PSSSPN 569
           +   RD+   +SSP+
Sbjct: 170 SLDGRDSGRGASSPS 184


>AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical
           protein Y18D10A.10 protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 316 LWLGLGRILRSPTKTTCLPLNSF 248
           +W+G  R  R P K +C PL++F
Sbjct: 143 VWVGAYRKARCPNKPSCTPLDTF 165


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 105 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 19
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,997
Number of Sequences: 27780
Number of extensions: 272870
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)