Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20677
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 94 8e-20
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 93 1e-19
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 93 1e-19
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 91 5e-19
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 91 5e-19
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.1
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.1
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.4
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 27 7.5
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 9.9
At3g06180.1 68416.m00710 expressed protein 27 9.9
At1g18550.1 68414.m02314 kinesin motor protein-related contains ... 27 9.9
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 27 9.9
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 93.9 bits (223), Expect = 8e-20
Identities = 46/87 (52%), Positives = 64/87 (73%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 428
K+FSGK V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRT 141
Query: 429 RVKLDGSQLIKVHLDKNQQTTIEHKVE 509
R +LDGS+++KV LD ++ E+K+E
Sbjct: 142 RYRLDGSKIMKVFLDAKEKNNTEYKLE 168
Score = 73.7 bits (173), Expect = 9e-14
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +1
Query: 19 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 192
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 193 MPKLKAFQKIQIRLVRELEK 252
KAF+KI RLVRELEK
Sbjct: 67 FRLRKAFRKIHPRLVRELEK 86
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 509 TFQSVYKKLTGREVTFEFP 565
T VY+KLTG++V FE+P
Sbjct: 169 TMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 93.1 bits (221), Expect = 1e-19
Identities = 48/95 (50%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 428
K+FSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 429 RVKLDGSQLIKVHLDKNQQTTIEHKVEP-SSLYTR 530
R +LDG++++KV LD ++ E+KVE S++Y +
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKK 176
Score = 68.9 bits (161), Expect = 2e-12
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +1
Query: 19 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 192
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 193 MPKLKAFQKIQIRLVRELEK 252
KA++KI +RLVRELEK
Sbjct: 67 YRLRKAYRKIHVRLVRELEK 86
Score = 34.3 bits (75), Expect = 0.065
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 512 FQSVYKKLTGREVTFEFP 565
F +VYKKLTG++V FEFP
Sbjct: 170 FSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 93.1 bits (221), Expect = 1e-19
Identities = 48/95 (50%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 428
K+FSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 429 RVKLDGSQLIKVHLDKNQQTTIEHKVEP-SSLYTR 530
R +LDG++++KV LD ++ E+KVE S++Y +
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKK 176
Score = 68.9 bits (161), Expect = 2e-12
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +1
Query: 19 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 192
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 193 MPKLKAFQKIQIRLVRELEK 252
KA++KI +RLVRELEK
Sbjct: 67 YRLRKAYRKIHVRLVRELEK 86
Score = 34.3 bits (75), Expect = 0.065
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 512 FQSVYKKLTGREVTFEFP 565
F +VYKKLTG++V FEFP
Sbjct: 170 FSAVYKKLTGKDVVFEFP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 91.1 bits (216), Expect = 5e-19
Identities = 44/87 (50%), Positives = 64/87 (73%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 428
K+FSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 429 RVKLDGSQLIKVHLDKNQQTTIEHKVE 509
R +LDG++++KV LD + E+K+E
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLE 168
Score = 78.2 bits (184), Expect = 4e-15
Identities = 39/80 (48%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +1
Query: 19 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 192
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 193 MPKLKAFQKIQIRLVRELEK 252
KAF+KI +RLVRELEK
Sbjct: 67 FRLRKAFRKIHLRLVRELEK 86
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 509 TFQSVYKKLTGREVTFEFP 565
T VY+KLTG++V FE+P
Sbjct: 169 TMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 91.1 bits (216), Expect = 5e-19
Identities = 44/87 (50%), Positives = 64/87 (73%)
Frame = +3
Query: 249 KEFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 428
K+FSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 429 RVKLDGSQLIKVHLDKNQQTTIEHKVE 509
R +LDG++++KV LD + E+K+E
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLE 168
Score = 78.2 bits (184), Expect = 4e-15
Identities = 39/80 (48%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +1
Query: 19 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 192
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 193 MPKLKAFQKIQIRLVRELEK 252
KAF+KI +RLVRELEK
Sbjct: 67 FRLRKAFRKIHLRLVRELEK 86
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 509 TFQSVYKKLTGREVTFEFP 565
T VY+KLTG++V FE+P
Sbjct: 169 TMVGVYRKLTGKDVVFEYP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 332 QTKEATLKDIDLCVRCYPRGLG 397
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 332 QTKEATLKDIDLCVRCYPRGLG 397
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 451 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 350
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 529 LVYRLEGSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTK 392
L +RL T CS + +FL K + EPSN + R + A TK
Sbjct: 173 LKWRLRAITPCSYIR-YFLRKMSKCDQEPSNTLISRSLQVIASTTK 217
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 86 NSKPTPTSKPNFGSF 130
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At3g06180.1 68416.m00710 expressed protein
Length = 241
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = -3
Query: 128 SSRSWALRSELVSSSTSACEIEVSKESASAPLALMIFVLIL 6
+SRS + S SSS+S+ + + K S SA L L+I +L+L
Sbjct: 24 ASRSASNHSSSSSSSSSS--LHLCKHSPSATLDLLILILVL 62
>At1g18550.1 68414.m02314 kinesin motor protein-related contains
similarity to kinesin-related protein GI:4493964 from
[Plasmodium falciparum]
Length = 799
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 238 RELEKNSVVNM*SLL---ETVRSCLSPATKLVLLTNKRG 345
R L+ N VV++ L ETVR LSP L+L +K+G
Sbjct: 277 RSLDGNHVVHLSYLEVYNETVRDLLSPGRPLILREDKQG 315
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.1 bits (57), Expect = 9.9
Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +1
Query: 58 ETSISQALVELETN-SDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRL 234
E + SQ + L++ +D+K QLR+ TK+KEI + +S++ + K+Q+R
Sbjct: 915 EEAKSQEIEALQSVLTDIKLQLRDTQETKSKEIS--DLQSVLTDI---------KLQLRD 963
Query: 235 VRELEKNSVVNM*SLLETVRSCLSPATKLVLLTN 336
+E + + ++ S L+ ++ + +K + +TN
Sbjct: 964 TQETKSKEISDLQSALQDMQLEIEELSKGLEMTN 997
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,697,917
Number of Sequences: 28952
Number of extensions: 259495
Number of successful extensions: 706
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -