Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20676
         (733 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O51069 Cluster: Chemotaxis protein methyltransferase; n...    34   3.1  
UniRef50_A2DDL4 Cluster: MCM2/3/5 family protein; n=1; Trichomon...    34   4.1  
UniRef50_Q22P25 Cluster: ATPase, histidine kinase-, DNA gyrase B...    33   9.5  

>UniRef50_O51069 Cluster: Chemotaxis protein methyltransferase; n=3;
           Borrelia burgdorferi group|Rep: Chemotaxis protein
           methyltransferase - Borrelia burgdorferi (Lyme disease
           spirochete)
          Length = 283

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 480 IQYLRMIQNVSTSHESLYRQSSH*NFNNNKL 388
           IQ + +I  +ST+H   +R+S H +F NNK+
Sbjct: 72  IQLIELIDKISTNHTYFFRESKHFDFLNNKI 102


>UniRef50_A2DDL4 Cluster: MCM2/3/5 family protein; n=1; Trichomonas
           vaginalis G3|Rep: MCM2/3/5 family protein - Trichomonas
           vaginalis G3
          Length = 754

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 586 IQHQTVEQNKSGDACGGVPVPLAVERRCEPSRPPAPRLVRALNFDARGI 732
           ++HQ V+  K GD C  + +P+AV    + +    P L R   F A G+
Sbjct: 221 LRHQLVDTAKPGDRCQFIGMPVAVPTTAKRAIGERPVLTRGAGFQADGV 269


>UniRef50_Q22P25 Cluster: ATPase, histidine kinase-, DNA gyrase B-,
           and HSP90-like domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: ATPase, histidine
           kinase-, DNA gyrase B-, and HSP90-like domain containing
           protein - Tetrahymena thermophila SB210
          Length = 2111

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -3

Query: 479 YN-IFV*FKTSVLRMSLFIDSPVTKILITISCVSLSLYQKINKIKMNYISMLLSSIQGTI 303
           YN + + +K SV R S  +   ++ +L + + + L+LY  +  I  NY S   SS     
Sbjct: 555 YNQLIIIYKLSVTRFSQKLTILISFVLFSFAIIRLNLYTYLGDINQNYSSNSKSSKNIIQ 614

Query: 302 GMLFN*VIGMVLPY 261
            +LF+ V  + L Y
Sbjct: 615 SVLFDCVFAISLLY 628


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,664,930
Number of Sequences: 1657284
Number of extensions: 12117665
Number of successful extensions: 36885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36857
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)