Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20676
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    29   0.90 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.6  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   6.4  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    26   6.4  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    25   8.4  

>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 148 NKIFIIKIAVPLAAGSRRSVPPPAPRLPVCS 240
           NK+F +K  VP ++      PPP  RLP  S
Sbjct: 181 NKMFSLKSRVPSSSSGSFVAPPPQMRLPAYS 211


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 731  IPRASKFNALTSRGAGGREGSHRLSTARGTGTPPHAS 621
            +  ++K  A+TS+    R GSH   +    GT PH +
Sbjct: 1075 VNNSTKPVAVTSKNGHSRNGSHAAHSNNVIGTQPHVN 1111


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 88  LAILGYIGISLNKEVLKP*ANKIFIIKIAVPLAAGSRRSVPPPAPRLPVCSFTYIKNQYG 267
           L  +GYI  S++ EVL   +N I        + AG+R+  P  A RL      Y   ++ 
Sbjct: 151 LQTIGYICESVSPEVLSAQSNAIL-----TAVVAGARKEEPDAAVRLAALGALYDSLEFV 205

Query: 268 R 270
           R
Sbjct: 206 R 206


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 461 FKTSVLRMSLFIDSPVTKILITISCVSLSLYQKINKIKMNYI---SMLLSSIQGTI 303
           F   V   SLF+++   + + + SCV L +  K  K+  + +   S LL +  GT+
Sbjct: 157 FADEVPLASLFVENVCNETIPSQSCVRLKINDKTRKVDASALEKKSCLLPNSSGTL 212


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 154 SYWLTVLTLLCSMIFQYILELLIVHER 74
           S W++ +   CSM+++  L L+IV+ +
Sbjct: 153 STWMSSMLYACSMLYKAKLPLIIVYNK 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,414
Number of Sequences: 5004
Number of extensions: 50295
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)