Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20676
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0103 - 801800-802283,804653-804763,804918-804997 30 2.2
11_01_0103 - 758526-758554,758933-759378,759770-759795,760107-76... 30 2.2
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 29 3.8
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 29 5.0
11_06_0541 + 24771145-24775479 28 6.6
10_08_0100 + 14788426-14789097 28 6.6
07_03_1028 - 23378140-23378802 28 6.6
12_02_0114 - 13805646-13805665,13806062-13806194,13806633-138069... 28 8.8
09_01_0140 + 2083885-2083969,2084178-2084653 28 8.8
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 8.8
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 28 8.8
>12_01_0103 - 801800-802283,804653-804763,804918-804997
Length = 224
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 119 NDIPIYPRIANSSRTVSTRTLRQVRSEPREEPLGWTT 9
+ +P YP SSR RT +Q R PR+E WTT
Sbjct: 4 DSVPSYPSDLGSSRA---RTPQQQRVSPRKEERTWTT 37
>11_01_0103 -
758526-758554,758933-759378,759770-759795,760107-760182,
761913-762023,762164-762243
Length = 255
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 119 NDIPIYPRIANSSRTVSTRTLRQVRSEPREEPLGWTT 9
+ +P YP SSR RT +Q R PR+E WTT
Sbjct: 4 DSVPSYPSDLGSSRA---RTPQQQRVSPRKEERTWTT 37
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 71 STRTLRQVR--SEPREEPLGWTTS 6
S +TLRQ+ EPR+ P GWT S
Sbjct: 433 SAKTLRQILWPGEPRDTPRGWTVS 456
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 149 LAHGFNTSLFNDIPIYPRIANSSRTVSTRTLRQVRSEPREE 27
+ GF F+D + ++ T+ RT+ R+ PREE
Sbjct: 130 MPRGFGFVTFSDPSVIDKVLQDEHTIDGRTVEVKRTVPREE 170
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 190 GSRRSVPPPAPRLPVCSFTYIKNQY 264
GS + PR P CS+ ++KN+Y
Sbjct: 1416 GSEQGEKEDDPRFPACSWLFLKNKY 1440
>10_08_0100 + 14788426-14789097
Length = 223
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +1
Query: 196 RRSVPPPA-PRLPVCSFT 246
RR P PA PRLP+CS+T
Sbjct: 179 RRPAPSPASPRLPMCSYT 196
>07_03_1028 - 23378140-23378802
Length = 220
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 692 GAGGREGSHRLSTARGTGTPPHASP 618
GAGGR R T G PP A+P
Sbjct: 138 GAGGRRSQRRAPTISGPRVPPPATP 162
>12_02_0114 -
13805646-13805665,13806062-13806194,13806633-13806975,
13807375-13807583,13807995-13808243
Length = 317
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 598 TVEQNKSGDACGGVPVPLAVERRCE-PSRPPAPR 696
+V + GD C GV LAVE +C PS PR
Sbjct: 278 SVSNDVFGDPCRGVLKDLAVEAKCSPPSTTKEPR 311
>09_01_0140 + 2083885-2083969,2084178-2084653
Length = 186
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 683 GREGSHRLSTARGTGTPPHASPL 615
GR SHRL+T+RG SPL
Sbjct: 120 GRRSSHRLNTSRGASDGGRLSPL 142
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 370 YNDNDTQLIVIKILVTGLSIKRLMRSTDVLNHTKILYFSI*LYVLR 507
Y + + + ++ L IK T++ NH KIL ++ LY++R
Sbjct: 939 YREQSVRWFIRVLMTVFLCIKACTSETELPNHIKILAKTLQLYMIR 984
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 574 NLTSIQHQTVEQNKSGDACGGVPVPLAVERRCEPSRPPAP 693
N + T + N G G VPVP+A + P R P
Sbjct: 305 NYEDVTRDTQDNNHDGRNGGTVPVPVAAAKVSSPPRTSVP 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,592,628
Number of Sequences: 37544
Number of extensions: 330396
Number of successful extensions: 1387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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