Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20676
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53342-2|AAA96214.1|  272|Caenorhabditis elegans Suppressor of a...    31   0.64 
U53342-1|AAA96213.2|  371|Caenorhabditis elegans Suppressor of a...    31   0.64 
Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U53342-2|AAA96214.1|  272|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 7, isoform a protein.
          Length = 272

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 419 PVTKILITISCVSLSLYQKINK 354
           PVT IL+TI C+S+++Y  I K
Sbjct: 78  PVTSILLTIVCISIAIYSLIRK 99


>U53342-1|AAA96213.2|  371|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 7, isoform b protein.
          Length = 371

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 419 PVTKILITISCVSLSLYQKINK 354
           PVT IL+TI C+S+++Y  I K
Sbjct: 219 PVTSILLTIVCISIAIYSLIRK 240


>Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 194 DPAARGTAILIINILLAHGFNTSLFNDIPIYPRIANSSRTVSTRTLRQVRSEPREEPLGW 15
           DP  R + +L+I  L   G  T+L        +IAN +R V +  + Q R     + L W
Sbjct: 372 DPTYRLSGVLLIAQLSTKGSLTALEGYTETAVKIANENRDVISGFITQTRVSACSDLLNW 431

Query: 14  T 12
           T
Sbjct: 432 T 432


>Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 194 DPAARGTAILIINILLAHGFNTSLFNDIPIYPRIANSSRTVSTRTLRQVRSEPREEPLGW 15
           DP  R + +L+I  L   G  T+L        +IAN +R V +  + Q R     + L W
Sbjct: 372 DPTYRLSGVLLIAQLSTKGSLTALEGYTETAVKIANENRDVISGFITQTRVSACSDLLNW 431

Query: 14  T 12
           T
Sbjct: 432 T 432


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = -3

Query: 524 ILCYGCRNTYS*-ILKYNI--FV*FKTSVLRMSLFIDSPVTKILITISCVSLSLYQKINK 354
           I+    R+T S   +KY+I   V F  S +  +LF+  PVT I++ +   S  +Y K   
Sbjct: 615 IVVQSARDTMSYKTVKYHIQVTVLFLCSCVIQALFVVLPVTHIVLCVYFDSFKIYTK--- 671

Query: 353 IKMNYISMLLSSIQGTIGMLF 291
               Y S+L  + QGT   LF
Sbjct: 672 -DYIYYSLLTQAHQGTAFTLF 691


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 100 GYIGISLNKEVLKP*ANKI--FIIKIAVPLAAGSRRSVPPPAP 222
           G  G+  N   +KP  NKI      I  P  A S   VPPPAP
Sbjct: 86  GLGGLFANGMPMKPSENKIRRATTSIGPPPTASSAPPVPPPAP 128


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 100 GYIGISLNKEVLKP*ANKI--FIIKIAVPLAAGSRRSVPPPAP 222
           G  G+  N   +KP  NKI      I  P  A S   VPPPAP
Sbjct: 86  GLGGLFANGMPMKPSENKIRRATTSIGPPPTASSAPPVPPPAP 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,078,500
Number of Sequences: 27780
Number of extensions: 290049
Number of successful extensions: 822
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)