Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20676
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 169 IAVPLAAGSRRSVPPPAPRLPV 234
           +  P   GSRR+ PPP    P+
Sbjct: 403 VVAPFLIGSRRTSPPPEDWKPL 424


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 395 ISCVSLSLYQKINKIKMNYISMLLSSIQGTIGMLFN*VIGMVLPYWFL 252
           I C+       IN +      + L  +   +G+LF+ +I +   +WFL
Sbjct: 291 IMCLIAGKIMSINNLTATAQMLGLYMVTVILGLLFHALITLPTIFWFL 338


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 3   RAGCPAEWLF 32
           R GCPA+WL+
Sbjct: 380 RNGCPADWLW 389


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 508 QP*HSIYCCLIFK*SINRNSIENLTSIQHQ 597
           QP +S  C L  K     NS+ N  SI H+
Sbjct: 397 QPLNSAVCALCHKVFRTLNSLNNHKSIYHR 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,408
Number of Sequences: 438
Number of extensions: 4106
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)