Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20676
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02170.1 68418.m00138 amino acid transporter family protein b...    29   2.4  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    28   5.6  
At5g08550.1 68418.m01017 expressed protein                             27   9.7  

>At5g02170.1 68418.m00138 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 526

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = -3

Query: 461 FKTSVLRMSLFIDSPVTKILITISCVSLSLYQKINKIKMNYISMLLSSIQGTIGMLFN*V 282
           F +S + +   + +P+TK  +TI+ V LSL + I        S  +S +  TI +L   V
Sbjct: 392 FTSSKIAVWTAVVTPMTKYALTITPVMLSLEELIPSSSRKMRSKGVSMLFRTILVLSTLV 451

Query: 281 IGMVLPYW 258
           + + +P++
Sbjct: 452 VALTVPFF 459


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 2554

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 37  GSERTCRKVRVLTVRELLAILGYIGISLNKEVLKP*ANKIFIIKIAVPLAAGSRRSVPPP 216
           GS   CR      +RE  A + Y G+  N EV +     +  +  + P        +PPP
Sbjct: 438 GSVPGCRARLWRRIREFNACIPYTGVPANSEVPEVTLMALITMLPSTPNLPVDAPPLPPP 497

Query: 217 APR 225
           +P+
Sbjct: 498 SPK 500


>At5g08550.1 68418.m01017 expressed protein
          Length = 908

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 695 RGAGGR--EGSHRLSTARGTGTPPHA 624
           +G G R  EGSHR  T+ G G P H+
Sbjct: 286 KGIGKRMDEGSHRTVTSNGIGVPLHS 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,860,010
Number of Sequences: 28952
Number of extensions: 255785
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)