Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20674
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 32 0.082
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 2.3
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 27 3.1
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 27 3.1
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 4.1
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 5.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.4
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 9.4
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo... 25 9.4
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 32.3 bits (70), Expect = 0.082
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 366 FRAQRNFYISGFALFLLVVIRRLVQMISQLATLLAQSEANFRQAQSAT 509
F AQRN Y+ G ALFL +V+ R + + + +A Q +++T
Sbjct: 98 FYAQRNLYLCGSALFLSLVVNRYYLALEAMIAAQDKMQALQTQVEAST 145
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 506 YTTARTLLEKQGTGEEQSKKEIEDLRTQ 589
Y R LL +QG KKE+E + TQ
Sbjct: 95 YERVRRLLNQQGGKSSLQKKEVEQIETQ 122
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +3
Query: 186 VLQIEISSLHKRAGIYLFSDSHWVLVLCLLDAIR 287
V++++I + +G +LFSDSH +++ ++ +R
Sbjct: 667 VIKVDIVDISDVSGQHLFSDSHELIIKSWIELLR 700
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 150 NFADSQSEQMAEVLQ-IEISSLHKRAGIYLFSDSHWV 257
N + E +A LQ IE+ S+ +R +Y D +WV
Sbjct: 22 NEEEELDEAIAAALQKIEVPSIPRRVKVYEMEDENWV 58
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +2
Query: 362 IVSCTEKLLHIWLCTFPPCRHPSFGSNDFTTGYIVSSV*GKLPPSSECYTTARTLLEKQG 541
+++ + + HIW + P +P+ + F G I V G + S C + + +K+
Sbjct: 394 LMNMCQNIWHIW---WAPIMYPNTDTPRFIKGLIGLLVVGGIVFVSSCIVSYMQIRDKRI 450
Query: 542 TGEEQSKKEIEDLRTQ 589
Q K+ +D+ T+
Sbjct: 451 KRSIQDAKDFDDVFTE 466
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 267 CLLDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRR 431
C L + +KY +EP DH + E G+ + R + SG + +LV + R
Sbjct: 733 CFLKNVAIGEKY--VEPYDHMEIVDETTGDKAVIRFKSGGMFSGRSEDVLVTVIR 785
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 115 FLYTEIAVVLL-LTLPIASPSRWQKFFKSKFLAYISGQASIYFLILIGC*YYV 270
+ +T + VVLL LT+ + + FF F + ++ FLI G YY+
Sbjct: 1215 YSFTAVVVVLLILTVKLIRLQNHKNFFMKLFQLTPTSKSFQNFLIFAGVIYYL 1267
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 582 LRSSISFLLCSSPVPCFSNKVLAVV*HSELGGSLPQTELT 463
+ S I FLLC CF++ + A++ S G +L + T
Sbjct: 403 VNSQILFLLCIFVFLCFASSLGALIHRSVYGSALSYVKYT 442
>SPAC20G4.04c |hus1||checkpoint clamp complex protein
Hus1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 81 NHESAMDNYRDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSLHKRAGIYLFSDSHWVL 260
N E D+S + ++R P F + + V ++ISS+ KR I F + H L
Sbjct: 204 NPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRV-IACFCEGH-AL 261
Query: 261 VL 266
VL
Sbjct: 262 VL 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,843
Number of Sequences: 5004
Number of extensions: 55715
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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