Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20674
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 35 0.086
03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741... 31 0.80
12_02_0437 - 19084990-19087695 29 4.3
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 29 4.3
04_04_0063 - 22441549-22442961 29 5.6
04_03_0379 + 15141127-15141231,15141566-15141769,15141856-151420... 28 7.4
04_03_0349 - 14738360-14738385,14738762-14738807,14738887-147391... 28 7.4
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 7.4
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 28 9.8
06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048 28 9.8
03_02_1029 - 13488535-13493037 28 9.8
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 9.8
>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 114 VSLYRDRSRPPFNFADSQSEQMAEVLQIEISSLHKRAGIYLFSDSHWVLVLCLL 275
+S +D P + S E+L I+ S ++KR+ +Y F H VLV C+L
Sbjct: 1155 ISKIKDGYNPATWMLEVTSTTQEEMLGIDFSEIYKRSELYQFVSFHAVLVNCIL 1208
>03_02_0317 -
7414477-7414555,7414646-7414701,7415877-7416024,
7416376-7416380,7416512-7416594,7416707-7416878
Length = 180
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 85 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQ 183
M+LQW I+A + E AV ++LTLP R Q
Sbjct: 1 MALQWMILACVVAAEAAVAVMLTLPAPRAVRKQ 33
>12_02_0437 - 19084990-19087695
Length = 901
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 289 RCKNIQILNRQTTSISTPKCKVT-*DCFVHRETSTYLALHFSSLSSSVVWFK*FH 450
R KN+Q L+ + TS+S C++T C H ST L+ +S S +V + H
Sbjct: 626 RLKNLQTLHLRRTSVSELPCEITLLACLRHLSVST--DLYGTSFSGNVYGLRSLH 678
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 82 FHYFFNTVINYTMQQTIVDEQQTMTKF 2
FH+FF T+ N T Q+ ++ +T+ KF
Sbjct: 157 FHHFFRTISN-THQENVITSMETVMKF 182
>04_04_0063 - 22441549-22442961
Length = 470
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 545 GEEQSKKEIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDRLAEEHSKLQKKL-T 721
GEE+S+K ++DL + +++ E N E +RL E + +L
Sbjct: 120 GEEKSRKALDDLSVALSDVTMEAKQVKMWLSEAQAELEAANAEAERLRHELDAAEARLRD 179
Query: 722 VSGEGD 739
VS E D
Sbjct: 180 VSDEHD 185
>04_03_0379 +
15141127-15141231,15141566-15141769,15141856-15142037,
15142898-15143036,15143111-15143299,15143943-15144050,
15144143-15144222,15144549-15144600,15144731-15144799,
15144876-15144910,15145351-15145510,15147414-15147470,
15147566-15147622,15147971-15148027,15148126-15148182,
15148551-15148670,15148760-15148996,15149550-15149591
Length = 649
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 82 FHYFFNTVINYTMQQTIVDEQQTMTKF 2
FH+FF TV N T Q+ ++ +T+ KF
Sbjct: 156 FHHFFRTVSN-THQEHVISYMETIMKF 181
>04_03_0349 -
14738360-14738385,14738762-14738807,14738887-14739123,
14739213-14739332,14739702-14739758,14740262-14740318,
14740412-14740468,14742372-14742531,14742972-14743006,
14743083-14743151,14743282-14743333,14743660-14743739,
14743832-14743939,14744583-14744771,14744846-14744984,
14745845-14746026,14746113-14746316,14746651-14746755
Length = 640
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 82 FHYFFNTVINYTMQQTIVDEQQTMTKF 2
FH+FF TV N T Q+ ++ +T+ KF
Sbjct: 156 FHHFFRTVSN-THQEHVISYMETIMKF 181
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 638 AVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE 754
++ S+ EG+NK+ + + K ++ G+ KKDE
Sbjct: 619 SIDSEVEGINKKGETVLSVEGKKSSPISPKGQDTDKKDE 657
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 294 QKYSNIEPSDHQHLDAEMQGNMR 362
++YS I PS++ H DA+ +G++R
Sbjct: 594 RRYSMITPSNNHHRDADHRGSLR 616
>06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048
Length = 250
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 563 KEIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDS 742
+EI+ ++ Q+ A + Q+EGL EY+ L E++ L +L + S
Sbjct: 183 EEIKKMKRQLKEKANEAKDAEAKALAAQKQSEGLMIEYNHLVEDNKHLHDQLESADLTVS 242
Query: 743 KKD 751
+ D
Sbjct: 243 RSD 245
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 108 RDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSL 212
R V+LYR +P FA S + +E+ QIE+S +
Sbjct: 494 RTVTLYRGPEQPVVFFAPPTSVRSSELHQIELSEI 528
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 542 TGEEQSKKEIEDLRTQI 592
TG EQ KK++ED RTQ+
Sbjct: 850 TGSEQVKKQLEDWRTQL 866
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,627
Number of Sequences: 37544
Number of extensions: 357891
Number of successful extensions: 850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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