Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20674
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)             31   0.81 
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   31   1.4  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            29   3.3  
SB_31998| Best HMM Match : GATase (HMM E-Value=4e-05)                  29   5.7  
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
          Length = 1344

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 514 C*NFVREARHWRGTKQERNRRSEDPNFEFGKGTFKREERQRSCKITS 654
           C NF + +RH    K+    + E  + E G G +K+ ER  S   +S
Sbjct: 148 CFNFTKPSRHVVSFKRRNVEKDERESLESGSGHYKKVERPNSLPTSS 194


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 647 SQAEGLNKEYDRLAEEHSKLQKKLTVSGEGDSKKDE*ILTLQ 772
           S A+ +  E  +  +E   LQK+L +SGE + +KD+ +L LQ
Sbjct: 297 SDADEIQSELGKTKQEMLALQKELFLSGEREKRKDQ-LLDLQ 337


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 357 CYLAFRRRDAGGLTVQYLNIFASHELHLADIILAPNENQKINRCLPAY 214
           CYL ++ RD+  + + +LN F   E+     I+A +   K  + +  Y
Sbjct: 714 CYLFYKERDSSKVLIDHLNDFGGTEIEKTTPIVAKSNIDKRQQKVTTY 761


>SB_31998| Best HMM Match : GATase (HMM E-Value=4e-05)
          Length = 463

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 168 SEQMAEVLQIEISSLHKRAGIYLFSDS 248
           SE+M EVL++ + S  KR GI + SD+
Sbjct: 208 SEEMNEVLKMSVISTSKRIGIVICSDA 234


>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 479 GKLPPSSECYTTARTLLEKQGTGEEQSKKEIED 577
           G  P  +  + TARTLLEK  + +  + K+ E+
Sbjct: 753 GSGPDKTSAFVTARTLLEKGSSSQSGASKDHEE 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,401
Number of Sequences: 59808
Number of extensions: 416054
Number of successful extensions: 966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)