Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20674
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein. 83 2e-16
AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical... 83 2e-16
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z93381-5|CAB07608.2| 720|Caenorhabditis elegans Hypothetical pr... 29 5.1
U21321-3|AAG00052.2| 655|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF036699-2|AAB88361.2| 109|Caenorhabditis elegans Hypothetical ... 28 8.9
>AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein.
Length = 213
Score = 83.0 bits (196), Expect = 2e-16
Identities = 45/102 (44%), Positives = 66/102 (64%)
Frame = +3
Query: 204 SSLHKRAGIYLFSDSHWVLVLCLLDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRN 383
++L K A IY + +VL + D +RE KY+ +E + +++ +MRLFRAQRN
Sbjct: 42 TALAKHAHIYSITFG-FVLFILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRN 100
Query: 384 FYISGFALFLLVVIRRLVQMISQLATLLAQSEANFRQAQSAT 509
YISGFAL L +VI+R++ ++ + A L A SEA RQA+SAT
Sbjct: 101 LYISGFALLLWLVIQRIMTLLGRAAQLEAASEAAMRQAESAT 142
Score = 54.8 bits (126), Expect = 7e-08
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +1
Query: 85 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIY 237
M+LQWTI+A LY EIA+ L LP P+ W K FKS+ ++ A IY
Sbjct: 1 MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIY 51
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 512 TARTLLEKQGTGEEQS--KKEIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDRL 685
TARTL+ T EE + K+IE L+ ++ +K Q+EGL +E+DR+
Sbjct: 144 TARTLMNSADTNEEAAGLAKQIEKLKGELKSANTDRD-------TLKKQSEGLQREFDRV 196
Query: 686 AEEHSKLQKKLTVSGEGDSKKD 751
++ + + +GD KKD
Sbjct: 197 SD-----LLRDSAESKGDKKKD 213
>AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical
protein Y54G2A.18 protein.
Length = 213
Score = 83.0 bits (196), Expect = 2e-16
Identities = 45/102 (44%), Positives = 66/102 (64%)
Frame = +3
Query: 204 SSLHKRAGIYLFSDSHWVLVLCLLDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRN 383
++L K A IY + +VL + D +RE KY+ +E + +++ +MRLFRAQRN
Sbjct: 42 TALAKHAHIYSITFG-FVLFILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRN 100
Query: 384 FYISGFALFLLVVIRRLVQMISQLATLLAQSEANFRQAQSAT 509
YISGFAL L +VI+R++ ++ + A L A SEA RQA+SAT
Sbjct: 101 LYISGFALLLWLVIQRIMTLLGRAAQLEAASEAAMRQAESAT 142
Score = 54.8 bits (126), Expect = 7e-08
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +1
Query: 85 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIY 237
M+LQWTI+A LY EIA+ L LP P+ W K FKS+ ++ A IY
Sbjct: 1 MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIY 51
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 512 TARTLLEKQGTGEEQS--KKEIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDRL 685
TARTL+ T EE + K+IE L+ ++ +K Q+EGL +E+DR+
Sbjct: 144 TARTLMNSADTNEEAAGLAKQIEKLKGELKSANTDRD-------TLKKQSEGLQREFDRV 196
Query: 686 AEEHSKLQKKLTVSGEGDSKKD 751
++ + + +GD KKD
Sbjct: 197 SD-----LLRDSAESKGDKKKD 213
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +3
Query: 300 YSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQMISQLATLLAQSE 479
++ EPSD+ D +LF N Y++ +A + L + V + S +T L
Sbjct: 5426 FAGAEPSDYGRADDHDDAMRKLFVMNMNSYLASYASYCLDLKGEAVSVYSACSTALVAVA 5485
Query: 480 ANFRQAQSATL 512
+ QS ++
Sbjct: 5486 NAVKSIQSGSM 5496
>Z93381-5|CAB07608.2| 720|Caenorhabditis elegans Hypothetical
protein F28G4.5 protein.
Length = 720
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 85 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIYFLILIG 255
+++ W I+A + + ++ PI WQ F + + AYI +YF ++IG
Sbjct: 571 IAVSWVIVANHMGWGGPIDAFMSHPI-----WQPFGRLSYCAYIVHYVVLYFYLMIG 622
>U21321-3|AAG00052.2| 655|Caenorhabditis elegans Hypothetical
protein ZK177.4 protein.
Length = 655
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 494 SSECYTTARTLLEKQGTGEEQSK-KEIEDLRTQI 592
S+E + A +L+K+GTGEEQ++ +E T+I
Sbjct: 603 SNEIHRMANIVLKKRGTGEEQNRFAAVEKNATEI 636
>AF036699-2|AAB88361.2| 109|Caenorhabditis elegans Hypothetical
protein F58F6.5 protein.
Length = 109
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 73 NSEIMSLQWTIIATFLY-TEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIYFLI 246
+SE L +++++ F+ T +A +L L+ + S W+ F +F +++ + F+I
Sbjct: 19 DSEKHGLYYSVVSLFVVSTVVATILTLSFLVLSILLWRNFKSMRFFWFLTQLTTSAFII 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,340,970
Number of Sequences: 27780
Number of extensions: 321663
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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