Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20674
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi...    33   0.22 
At5g42570.1 68418.m05183 expressed protein low similarity to SP|...    32   0.38 
At3g17780.1 68416.m02268 expressed protein                             31   1.2  
At1g48440.1 68414.m05415 expressed protein                             30   2.0  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    29   2.7  
At2g32530.1 68415.m03974 cellulose synthase family protein simil...    29   4.7  
At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    28   8.2  

>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 415

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 124 TEIAVVLLLTLPIASPSRWQKFFKSKFLAY 213
           T ++V+L LT+P  SPS W +F++S  + +
Sbjct: 168 TPVSVLLNLTIPKPSPSEWSRFYRSANIVF 197


>At5g42570.1 68418.m05183 expressed protein low similarity to
           SP|P51572 B-cell receptor-associated protein 31 (6C6-AG
           tumor-associated antigen) (DXS1357E) {Homo sapiens}
          Length = 218

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 530 EKQGTGEEQS--KKEIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDRLAEEHSK 703
           E +  GEE +  K +I+ L ++                A++ QA+G   EYDRL E++  
Sbjct: 141 EVKALGEEIAALKAKIKTLESESESKGKELKGAQGETEALRKQADGFLMEYDRLLEDNQN 200

Query: 704 LQKKLTVSGEGDSKK 748
           L+ +L   G     K
Sbjct: 201 LRNQLESIGHSPEGK 215


>At3g17780.1 68416.m02268 expressed protein
          Length = 129

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 85  MSLQWTIIATFLYTEIAVVLLLTLP 159
           M+LQW I++  +  E+A+ ++LTLP
Sbjct: 1   MALQWLILSYVVAAEVAIAVILTLP 25


>At1g48440.1 68414.m05415 expressed protein
          Length = 129

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 85  MSLQWTIIATFLYTEIAVVLLLTLP 159
           M+LQW I++  +  E+ + L+LTLP
Sbjct: 1   MALQWLILSYVVAVEVVITLVLTLP 25


>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 538 RHWRGTKQERNRRS-EDPNFEFGKGTFKREERQR 636
           ++W+G K+ER  RS  DP+ E  KG F  +  Q+
Sbjct: 212 KNWKGGKEEREFRSWRDPSDEIEKGEFIPDRWQK 245


>At2g32530.1 68415.m03974 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 141 PPFNFADSQSEQMAEVLQIEISSLHKRAGIYLFSDSHWVLVLCLLDAIREMQKYSNIEPS 320
           PP     S+  +  E+ + E   L +R       DSHW      LDA  + + +SN +P+
Sbjct: 177 PPAATESSEFSKDWEITKREYEKLSRRVEDAT-GDSHW------LDAEDDFEDFSNTKPN 229

Query: 321 DH 326
           DH
Sbjct: 230 DH 231


>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
           identical to SP|Q42510; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1451

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 330 AGGLTVQYLNIFASHELHLADIILAPNENQKINRCLPAY 214
           AG    QY+N+  +  L L    L P E+QKI R L A+
Sbjct: 632 AGTFDFQYMNLDTALRLFLETFRL-PGESQKIQRVLEAF 669


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,205
Number of Sequences: 28952
Number of extensions: 294630
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)