Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20673
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    28   1.2  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    28   1.5  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   1.5  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.1  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   6.1  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    25   8.1  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   8.1  

>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 284 KC*TSKLTWNYPYSR*WWNRRLYWRSPS 201
           KC    +  NYP+    W +RLYW+ P+
Sbjct: 249 KCNIGTIRHNYPHIN-QWLKRLYWKHPA 275


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +1

Query: 364 HGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPARSGR 543
           H  ++ Q    + L +     TVE  L  + ++ V +   P A+  + +F  L   RSG+
Sbjct: 561 HDELTGQAVNAFILLKPGYEATVE--LEKELIMAVRSTIGPFASPRKLIFSDLPKTRSGK 618

Query: 544 RLRSPLRKLRA 576
            +R  LRK+ A
Sbjct: 619 IMRRILRKILA 629


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 82  GIPTEPPSRSGLRTGAYSGRSPDG 153
           G+P  P   SG   G Y GR+P G
Sbjct: 423 GVPFSPSMPSGSSRGGYHGRNPGG 446


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 505 ARSSWQPESWERSRSAHR 452
           ++  WQP+SW+ SR+ ++
Sbjct: 70  SKEGWQPKSWKSSRNENK 87


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 364 HGYISRQFTRRYALPENCNPDT 429
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 421 PDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPARSGRRLRSPLRKLRA 576
           PD+ E      GV+   + +   +TKN  V  SL    +G+ + +  R+ R+
Sbjct: 173 PDSKECLFGVSGVIAATSLKGITSTKNRYVIRSLNVDETGKTIPNITRENRS 224


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 391 RRYALPENCNPDTVESRLSSDG---VLTVIAPRTPAATKNERVFPSLKP 528
           RR    + C  +  E  L+SD    +LTV +  +P  T+NE V  S+ P
Sbjct: 62  RRLERLQLCKRNEEEEMLNSDASEAMLTVSSVPSPTLTENESVNESVVP 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,433
Number of Sequences: 5004
Number of extensions: 50948
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)