Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20673
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0484 + 8805053-8805538 44 9e-05
03_02_0483 - 8804021-8804485 44 9e-05
03_02_0485 - 8808139-8808618 44 1e-04
03_02_0478 + 8775892-8776377 44 1e-04
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 42 6e-04
01_01_0229 - 1943473-1943922 41 8e-04
01_01_0231 + 1951047-1951499 41 0.001
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 38 0.008
01_01_0227 + 1933247-1933699 36 0.024
06_01_1017 - 7951985-7952425 32 0.39
11_02_0041 - 7669692-7670312 32 0.52
02_02_0077 - 6586638-6587165 31 0.69
02_05_0736 - 31327010-31327030,31327047-31327556 31 1.2
03_05_0543 - 25404630-25405408,25405461-25405605 30 2.1
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 30 2.1
07_01_0533 + 3942813-3943164,3943244-3943458 29 2.8
12_02_1174 - 26696869-26698191 29 4.8
12_02_0046 + 12830974-12832386 28 8.5
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 28 8.5
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 8.5
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 28 8.5
>03_02_0484 + 8805053-8805538
Length = 161
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 271 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 426
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 427 TVESRLSSDGVLTVIAPR 480
+++ + +GVLTV P+
Sbjct: 130 QIKASM-ENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 271 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 426
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 427 TVESRLSSDGVLTVIAPR 480
+++ + +GVLTV P+
Sbjct: 123 QIKASM-ENGVLTVTVPK 139
>03_02_0485 - 8808139-8808618
Length = 159
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 271 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 426
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 427 TVESRLSSDGVLTVIAPR 480
+++ + +GVLTV P+
Sbjct: 128 QIKASM-ENGVLTVTVPK 144
>03_02_0478 + 8775892-8776377
Length = 161
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 271 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 426
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 427 TVESRLSSDGVLTVIAPRTPA 489
+++ + +GVLTV P+ A
Sbjct: 130 QIKASM-ENGVLTVTVPKEEA 149
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 271 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 426
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 427 TVESRLSSDGVLTVIAPR 480
V++ L +GVLTV P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 271 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 426
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 427 TVESRLSSDGVLTVIAPR 480
V++ + +GVLTV P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 271 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 426
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 427 TVESRLSSDGVLTVIAPR 480
V++ + +GVLTV P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Frame = +1
Query: 259 QVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDE------HGYISRQ----FTRRYALP 408
++ D+ S EE+ V D +++ G+H++ + E G+ + + R ALP
Sbjct: 145 RMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALP 204
Query: 409 ENCNPDTVESRLSSDGVLTVIAPRTPAATK 498
+ C+ V + L +GVL V P+T K
Sbjct: 205 DECDKSKVRAEL-KNGVLLVTVPKTEVERK 233
>01_01_0227 + 1933247-1933699
Length = 150
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 331 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERV 510
V+GK++ER S +F RR+ LP D V + + +GVLTV P+ +
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKEETKKPQLKA 145
Query: 511 FP 516
P
Sbjct: 146 IP 147
>06_01_1017 - 7951985-7952425
Length = 146
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 298 ISVKTADGYVIVEGKHEERQDEHGYISR----QFTRRYALPENCNPDTVESRLSSDGVLT 465
++V+ A + E + E +D +++ +F R ALP + + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 466 VIAPRTPAATK 498
V+ P+ PA +
Sbjct: 124 VVVPKEPAPAR 134
>11_02_0041 - 7669692-7670312
Length = 206
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 382 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPARSG 540
+F RR+ +P + V +RL DGVLTV P+ P E ++ A +G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAGAG 192
>02_02_0077 - 6586638-6587165
Length = 175
Score = 31.5 bits (68), Expect = 0.69
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQ----DEHG----YISRQ-----FTRRYALP 408
+D+ +P ++ V+ DG V+ R D+ G Y+ + F RR+ LP
Sbjct: 66 VDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLP 125
Query: 409 ENCNPDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPARSG 540
E+ + D V + DGVLTV + P + +K A +G
Sbjct: 126 ESADLDGVRAEY-KDGVLTVTVDKKPPPEPKKPRVVEVKVAGAG 168
>02_05_0736 - 31327010-31327030,31327047-31327556
Length = 176
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 415 CNPDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPARSGRRLRSPLRKLRATKQNND 594
C P E + GV + + TPA K ++ + R RRL R L A KQ
Sbjct: 97 CTPRREELEAAEAGVRRLFSRHTPAWMKKQKRLQRRERERDERRLNKQKRPL-ALKQQQL 155
Query: 595 SRNAVNQKSVI--ACVNFICI 651
A ++V+ A +NF+ I
Sbjct: 156 KAQAPMTRAVLLFAYLNFVVI 176
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 262 VNLDVQHFSPEEISVKTAD-GYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVES 438
++LD F EEI V + G++ G ER SR F + + LP +CN D + +
Sbjct: 43 LSLDQLGFKREEIRVLVDNHGHLRTRG---ERPVAGNRWSR-FQKDFQLPADCNVDGIRA 98
Query: 439 RLSSDGVLTVIAPRTPA 489
+ ++ + + +TP+
Sbjct: 99 KFENEALTITLPKKTPS 115
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3
Query: 687 TIKRSVSQARTRNANKINTRYNTFLIHSVP 598
TI++ ++ RTRNAN I TR + FL H+ P
Sbjct: 351 TIRKRLTGDRTRNAN-ITTRDSPFLQHNTP 379
>07_01_0533 + 3942813-3943164,3943244-3943458
Length = 188
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +1
Query: 388 TRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPARSGRRLRSPLRK 567
TR LP CN T + S + + +P TP AT PS PA +G +P
Sbjct: 97 TRALELPAACNVKTPPASQCSTVGVPMPSPATP-ATPAAPAVPSETPAGTGGSKATPTTA 155
Query: 568 LRATKQNNDSRN---AVNQKSVIACVNFICI 651
T Q+ + A + +V+ V F I
Sbjct: 156 TTTTGQSASGGSVGKAASMATVVVSVAFALI 186
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 262 VNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESR 441
V + + F E++ V+ D + ++ E G +F + LP+NC+ D V +R
Sbjct: 26 VEIALPGFRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRAR 84
Query: 442 LSSDGVLTVIAPRTPAA 492
D L + P AA
Sbjct: 85 F-DDHKLIITLPLVAAA 100
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +3
Query: 387 HAALRSA*KLQP*HCRISVVL*RCADRDRSQDSGCHEERASVPITQTGPVRKEIKEPTA 563
H LR A L+P CR+ V D Q+S + P P I+EP A
Sbjct: 132 HLCLRQASDLEPVLCRVYVSPRAAKDSAAHQESAALTPQEPAPPLAHAPAPAPIQEPAA 190
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = +1
Query: 364 HGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPARSGR 543
HG Y LPE+ V SR S T +PR P S + A+
Sbjct: 80 HGLSLVPIDHGYRLPESPPRPRVASRRQSTHAPTAPSPRQPGRLPAHLTVAS-RAAQPAS 138
Query: 544 RLRSPLR 564
RLR+P R
Sbjct: 139 RLRAPAR 145
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = +1
Query: 37 RMLK*SKNVSAAIHPGIPTEPPSRSGL-------RTGAYSGRSPDGRHHANDVQRL 183
R++K + I P + PPSRS R+ + G S +HH +D Q L
Sbjct: 811 RVVKDQSSSELRIKPKVADRPPSRSSRSHSIGTDRSSTHEGSSHSKKHHEHDSQSL 866
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 88 PTEPPSRSGLRTGAYSGRSPDGRHHANDVQRLLPSVEADGD 210
P + G R A P+G A D + L+ E+DG+
Sbjct: 60 PRRSGAEQGARRAAAGSEKPEGSEEAEDEEFLVEEYESDGE 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,837,956
Number of Sequences: 37544
Number of extensions: 365752
Number of successful extensions: 1251
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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