Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20673
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 66 2e-11
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 62 6e-10
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 56 3e-08
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 56 3e-08
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 54 9e-08
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 53 3e-07
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 40 0.002
SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5) 35 0.075
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.30
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 2.1
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 28 8.6
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/69 (43%), Positives = 47/69 (68%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 447
LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ + TV SR++
Sbjct: 45 LDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRIT 103
Query: 448 SDGVLTVIA 474
DG+L + A
Sbjct: 104 GDGLLHIEA 112
Score = 31.5 bits (68), Expect(2) = 0.21
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 391 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPA 531
R + LP++ + D++ SRL DG L + A R T +ER L+ A
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNILRDA 207
Score = 20.6 bits (41), Expect(2) = 0.21
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 256 FQVNLDVQHFSPE 294
F V LDV FSP+
Sbjct: 143 FTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 61.7 bits (143), Expect = 6e-10
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +1
Query: 256 FQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTV 432
FQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE + ++
Sbjct: 6 FQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDESSI 64
Query: 433 ESRLSSDGVLTVIAPR--TPAATKNE 504
+R++ DG+L V A + PA T+N+
Sbjct: 65 STRIAEDGMLHVEALKKSPPATTENK 90
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDTV 432
F + LDV F PEE+ VK + V + E +EHG+ + RQF R + LP + DT+
Sbjct: 100 FTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDTL 157
Query: 433 ESRLSSDGVLTVIAPRTP 486
RL DGVL + A + P
Sbjct: 158 VPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 447
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 448 SDGVLTVIA 474
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVE 435
F + +DV F PE I V+ ++V HE + H Y + F R++ LP + D++
Sbjct: 98 FSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLT 156
Query: 436 SRLSSDGVLTVIAPRTPA 489
+RL +G L A ++ A
Sbjct: 157 TRLDKEGKLHFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 447
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 448 SDGVLTVIA 474
+ G L + A
Sbjct: 71 NHGQLHIEA 79
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVE 435
F + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D++
Sbjct: 99 FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLT 157
Query: 436 SRLSSDGVL 462
+RL +G L
Sbjct: 158 TRLDKEGKL 166
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 447
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 448 SDGVLTVIA 474
+ G L + A
Sbjct: 71 NHGQLHIEA 79
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVE 435
F + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D++
Sbjct: 99 FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLT 157
Query: 436 SRLSSDGVL 462
+RL +G L
Sbjct: 158 TRLDKEGKL 166
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 447
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 448 SDGVLTVIA 474
+ G L + A
Sbjct: 71 NHGQLHIEA 79
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 447
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 246 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 304
Query: 448 SDGVLTVIA 474
+ G L + A
Sbjct: 305 NHGQLHIEA 313
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVE 435
F + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D++
Sbjct: 99 FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLT 157
Query: 436 SRLSSDGVL 462
+RL +G L
Sbjct: 158 TRLDKEGKL 166
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVE 435
F + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D++
Sbjct: 333 FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLT 391
Query: 436 SRLSSDGVL 462
+RL +G L
Sbjct: 392 TRLDKEGKL 400
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 447
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 448 SDGVLTVIA 474
+ G L + A
Sbjct: 71 NHGQLHIEA 79
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVE 435
F + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D++
Sbjct: 99 FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLT 157
Query: 436 SRLSSDGVL 462
+RL +G L
Sbjct: 158 TRLDKEGKL 166
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +1
Query: 268 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 447
LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 13 LDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 71
Query: 448 SDGVLTVIA 474
+ G L + A
Sbjct: 72 NHGQLHIEA 80
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/99 (30%), Positives = 48/99 (48%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVE 435
F + +DV+ F PE I V+ ++V HE + H Y + F R++ LP + D++
Sbjct: 99 FSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDSLT 157
Query: 436 SRLSSDGVLTVIAPRTPAATKNERVFPSLKPARSGRRLR 552
+RL +G L A + A P+L P R + LR
Sbjct: 158 TRLDKEGKLHFEAKKRNA--------PALPPVRELKVLR 188
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 FQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI-SRQFTRRYALPE 411
F + LDV F PEE+ VK + V + E +EHG+ +RQF R + LP+
Sbjct: 28 FTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5)
Length = 191
Score = 34.7 bits (76), Expect = 0.075
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 693 INTIKRSVSQARTRNANKINTRYNTF-LIHSVPRVIVL-FRCSQLPQWAP*SPSGP 532
++ IKRS T N N NTR + L H V R ++L FR LP WA P P
Sbjct: 130 LSLIKRSSQFNSTGNINYTNTRMKCYALRHCVNRAVLLKFRALSLPTWAYSIPYQP 185
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 340 KHEERQDEHGYISRQFTRRYAL 405
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 690 NTIKRSVSQARTRNANKI--NTRYNTFLIHSVPRVIVLFRCSQLPQW 556
+TIK++V RN+N++ + R+ TFL+ PR+ R QW
Sbjct: 424 STIKQTVQGFVMRNSNQMKKDVRFQTFLVICSPRLAEAMRGLDFEQW 470
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 334 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 465
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 304 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 411
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 241 GDGGTDVSIGDRHLLPRTVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 62
G G + S G++ + V +WR +G + RS + EV K V + +W+QR
Sbjct: 132 GSGDRERSGGEKEVETEKEVEGSRKWRREGSGDRERSGGEKEVETEKEVE--ERRKWRQR 189
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 361 EHGYISRQFTRRYALPEN-CNPDTVESRLSSDGVLTVIAPRTPAATKNERVFPSLKPARS 537
+ G + + T Y+L E C+ S ++ GV+T + N+RV + P R
Sbjct: 144 QKGDVEIETTNLYSLKEQVCDFVEASSCIAFSGVVTGANSTSSRFKTNDRVCGIMSPCRV 203
Query: 538 GRRLRSPLRKLRATKQNNDSRNA 606
G ++R +L Q + A
Sbjct: 204 GEKVRCKEARLMTQPQGLNGMQA 226
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = +1
Query: 400 ALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNER------VFPSLK-PARSGRRLRSP 558
++P CN +E + DG T + + R ++ +L+ P + + L P
Sbjct: 1042 SVPSACNLGLIERSIGIDGTFTAVIGELKSENNLRRSSSTGDIYENLQHPLKCVKELCHP 1101
Query: 559 LRKLRATKQNNDSRNAVNQK 618
+ R K+ +RNAV +K
Sbjct: 1102 VAPPRLKKKLRQARNAVPEK 1121
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 82 GIPTEPPSRSGLRTGAYSGRS-PDGRH 159
G P+ PPSRS RT SG S D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,717,562
Number of Sequences: 59808
Number of extensions: 419143
Number of successful extensions: 1277
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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