Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20671
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   114   6e-27
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   4.7  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   4.7  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   8.2  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   8.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   8.2  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   8.2  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  114 bits (275), Expect = 6e-27
 Identities = 50/78 (64%), Positives = 64/78 (82%)
 Frame = +2

Query: 260 KRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPS 439
           +R+ +LP+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F+VRG MR VEFKVV+  P 
Sbjct: 132 ERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPD 191

Query: 440 PFCIVAPDTVIHCDGEPI 493
            F IV+ DT+IH +GEPI
Sbjct: 192 EFGIVSQDTIIHWEGEPI 209



 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 42/84 (50%), Positives = 56/84 (66%)
 Frame = +3

Query: 3   LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
           L+V++A +DDNSV+ LS   ME LQLFRGDTV++KGKRRK+TV IVL+D+   D   R+ 
Sbjct: 46  LVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEMEDGVARIN 105

Query: 183 XXXXXXXXXXXSDVVSIAPCPSVK 254
                       D+V+I PCP +K
Sbjct: 106 RVVRNNLRVRLGDIVTINPCPDIK 129


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 12  EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 125
           E+AV D+N+ ++L+  +  +    RGD  ++ G   ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 6   IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 134
           + +E  SD++ ++A++     EQ+   R    D  LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 405 ARMPPRTMKVSSRWIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 259
           + +P   +K     I   A++  G   T   +PV P+   ++G + TRF
Sbjct: 362 SHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 339  TSWRLTVRSIVTTPSWSGGACAPSSSKWSKQIHH 440
            T  RL  +   T PS       PSSS W+K+ HH
Sbjct: 1228 TDSRLVTKPTSTFPS---PPSPPSSSVWNKREHH 1258


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 249 LKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 157
           LKD   WI    + + E  F   G ++FS+QG
Sbjct: 441 LKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 477 QCITVSG-ATMQNGDGSVSTTLNSTARMPPR 388
           +C T+ G    QN +G +ST  NSTA + P+
Sbjct: 83  RCYTIIGFPEFQNSNG-ISTLYNSTALISPK 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,667
Number of Sequences: 5004
Number of extensions: 44239
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)