Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20671
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 143 6e-35
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 143 8e-35
08_02_0657 - 19749835-19751942,19753123-19753561 103 1e-22
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 33 0.16
05_07_0295 - 29051375-29052135,29053368-29053533 30 0.88
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 29 2.7
04_04_0735 - 27667780-27667887,27668116-27668211,27668346-276684... 28 4.7
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 27 6.2
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214... 27 6.2
03_02_0401 - 8146758-8146912,8147151-8147235,8147502-8147567,814... 27 6.2
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 27 8.2
11_02_0137 - 8702661-8703495,8703820-8704628 27 8.2
03_06_0674 - 35449373-35449465,35449959-35450112,35450763-354508... 27 8.2
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 27 8.2
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 27 8.2
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 143 bits (347), Expect = 6e-35
Identities = 60/79 (75%), Positives = 72/79 (91%)
Frame = +2
Query: 257 GKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDP 436
GKRVHILPIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP
Sbjct: 118 GKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDP 177
Query: 437 SPFCIVAPDTVIHCDGEPI 493
+ +CIVAPDT I CDGEPI
Sbjct: 178 TEYCIVAPDTEIFCDGEPI 196
Score = 100 bits (239), Expect = 7e-22
Identities = 48/84 (57%), Positives = 59/84 (70%)
Frame = +3
Query: 3 LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
L+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+RK+T+CIVL+D+ C + KIRM
Sbjct: 33 LVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADETCEEPKIRMN 92
Query: 183 XXXXXXXXXXXSDVVSIAPCPSVK 254
DVVS+ C VK
Sbjct: 93 KVVRKNLRVRLGDVVSVHQCQDVK 116
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 143 bits (346), Expect = 8e-35
Identities = 60/79 (75%), Positives = 72/79 (91%)
Frame = +2
Query: 257 GKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDP 436
GKRVHILPIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP
Sbjct: 118 GKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDP 177
Query: 437 SPFCIVAPDTVIHCDGEPI 493
+ +CIVAPDT I CDGEPI
Sbjct: 178 AEYCIVAPDTEIFCDGEPI 196
Score = 102 bits (244), Expect = 2e-22
Identities = 47/84 (55%), Positives = 59/84 (70%)
Frame = +3
Query: 3 LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
L+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+RK+T+CIVL+DD C + KIRM
Sbjct: 33 LVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKKRKDTICIVLADDTCEEPKIRMN 92
Query: 183 XXXXXXXXXXXSDVVSIAPCPSVK 254
DVVS+ CP VK
Sbjct: 93 KVVRKNLRVRLGDVVSVHQCPDVK 116
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 103 bits (246), Expect = 1e-22
Identities = 49/82 (59%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Frame = +2
Query: 254 NGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETD 433
N KRV + P DDSVEG++G+LFE YLKPYFM+A RP+ + D F+VRG M AVEFKV++T+
Sbjct: 120 NAKRVQLRPFDDSVEGISGDLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTE 179
Query: 434 P-SPFCIVAPDTVIHCD-GEPI 493
P + IVA DT I CD G+P+
Sbjct: 180 PNNEPVIVAGDTEIFCDEGDPV 201
Score = 81.0 bits (191), Expect = 5e-16
Identities = 34/81 (41%), Positives = 52/81 (64%)
Frame = +3
Query: 12 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXX 191
E V+ DNS V LS+A ME+L +FRGD V L+G+RR+E VC D++CPD ++R+
Sbjct: 39 EGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRREAVCYAQKDESCPDGRLRLSRGV 98
Query: 192 XXXXXXXXSDVVSIAPCPSVK 254
D+V++ PCP+++
Sbjct: 99 RSNLHVRLGDLVTVKPCPTIR 119
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 331 EAVLHGGLPSDPS*RHLHGPGGHARRRVQSGRNRSITILHRG 456
E++ H L + S HLHG G RR + +GR R+I +L G
Sbjct: 1248 ESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVLGHG 1289
>05_07_0295 - 29051375-29052135,29053368-29053533
Length = 308
Score = 30.3 bits (65), Expect = 0.88
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 312 LPVRPSTESSIGSMWTRFPFSLKDTELWIPHQKDAHEGCFSRHGSSEFS-HQGNYHLRAR 136
+P S++ + G MWT P L+D + + CFS GS ++ + LR +
Sbjct: 85 IPGPESSKENSGVMWTSSPDRLEDPRKPFQYSNSSGSPCFSESGSDIYNKREVIQKLRQQ 144
Query: 135 CKR 127
KR
Sbjct: 145 LKR 147
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 427 FDHFELDGAHAPPDHEGVVTMDRTVSLHEVRLQVYFE 317
F+ L+ DHE V+ D+ VSL +V++ Y+E
Sbjct: 401 FEFIPLEDGLRLTDHEEVIENDKLVSLVDVKVGCYYE 437
>04_04_0735 -
27667780-27667887,27668116-27668211,27668346-27668455,
27668545-27668648,27669279-27669556
Length = 231
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +2
Query: 242 SFSENGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKV 421
S+ +G+ V + + V+ T + L ++ Y P+ +DD F+VR M+ V+ K
Sbjct: 123 SYIHSGRDVFLENVGVGVDYWTSTGNALALSELNLKFYTPLRKDDRFVVR--MKVVKIKG 180
Query: 422 VETDPSPFCIVAPDTVIHCDGE 487
V PD + D +
Sbjct: 181 VRIIVEHLIETLPDRKLVVDAK 202
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 293 VEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPF 445
VEG+TG V + F A P + + GG A V PSPF
Sbjct: 569 VEGITGVAMVVLMTVSFTLATHPFRKGEKGGSGGGAAATVLPTVARLPSPF 619
>07_03_1607 +
28119886-28120239,28121097-28121153,28121377-28121464,
28121557-28121686,28121783-28121962,28122291-28122759
Length = 425
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 342 SWRLTVRSIVTTPSWSGGACAPSSSK 419
SWR VR IV TP SG P S K
Sbjct: 92 SWRGIVREIVRTPEASGNLTFPISLK 117
>03_02_0401 -
8146758-8146912,8147151-8147235,8147502-8147567,
8147744-8147802,8147911-8148013,8148227-8148358,
8148447-8148527,8148729-8148821,8148978-8149061,
8149242-8149300,8149405-8149481,8149639-8149789,
8150302-8150437
Length = 426
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 347 EAYRPIHRDDTFMVRGGMRAVE 412
+AYRP H D T+ + G+RAV+
Sbjct: 148 KAYRPSHADATYDFKYGVRAVQ 169
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 336 RTSWRLTVRSIVTTPSWSGGAC 401
RT+W L++ +I +TP++ G +C
Sbjct: 645 RTAWSLSLTTIDSTPNYRGKSC 666
>11_02_0137 - 8702661-8703495,8703820-8704628
Length = 547
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 336 GFKYTSNRLPVR--PSTESSIGSMWTRFPFSLKDTELWIPH 220
GF +SN+L P +G T FS+KD LW+ H
Sbjct: 81 GFSRSSNQLAFFWVPFLLIHLGGQDTMTAFSIKDNNLWLRH 121
>03_06_0674 -
35449373-35449465,35449959-35450112,35450763-35450860,
35450947-35451234,35451313-35451503,35451789-35452006,
35452314-35452653,35452726-35453167
Length = 607
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 480 SQCITVSGATMQNGDGSVSTTLNSTARMPPR---TMKVSSRWI 361
S C TV+G G+G+ S+T S + R T+ + + W+
Sbjct: 555 SPCSTVAGVPKNKGNGAASSTHKSVDSLVTRHGSTISIGASWL 597
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 415 ELDGAHAPPDHEGVVTMDRTVSLHEVRL 332
++DG H PDH+ + + ++V L + L
Sbjct: 564 DIDGLHELPDHKAMTSDTKSVDLESIEL 591
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 342 KYGFKYTSNRLPVRPSTESSIGS--MWTRFPFSLKD 241
++GF+Y L RP E S+GS +W + +LKD
Sbjct: 480 QFGFRYYEINLSTRP--EKSVGSDDIWEKATLALKD 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,629
Number of Sequences: 37544
Number of extensions: 318617
Number of successful extensions: 928
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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