Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20671
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        102   1e-22
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     29   1.6  
SB_53844| Best HMM Match : SRCR (HMM E-Value=0)                        27   8.4  
SB_35950| Best HMM Match : SRCR (HMM E-Value=0)                        27   8.4  
SB_57164| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)                     27   8.4  
SB_5121| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  102 bits (245), Expect = 1e-22
 Identities = 50/75 (66%), Positives = 58/75 (77%)
 Frame = +3

Query: 3   LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
           L+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVCIVLSDD   D+KIRM 
Sbjct: 21  LLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVCIVLSDDTISDDKIRMN 80

Query: 183 XXXXXXXXXXXSDVV 227
                       DVV
Sbjct: 81  RVVRMNLRVRLGDVV 95



 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 34/40 (85%), Positives = 39/40 (97%)
 Frame = +2

Query: 374 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI 493
           D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPV 143


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 9   VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 155
           +EE + D   +V+ S      LQL R  T +LK    K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189


>SB_53844| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 415

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 454 HDAKW*WICFDHFELDGAH 398
           H   W  IC+DH++L  AH
Sbjct: 255 HAGAWGLICYDHWDLHDAH 273


>SB_35950| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 501

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 454 HDAKW*WICFDHFELDGAH 398
           H   W  IC+DH++L  AH
Sbjct: 318 HAGAWGLICYDHWDLHDAH 336


>SB_57164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 33  NSVVALSQAKMEQLQLFRGD-TVLLKGKRRKETVCIVLSDDNCPDEKIR 176
           N  + L+ A+ E++ L R D T    G+R ++T C+   +D    EKIR
Sbjct: 129 NEKLPLTHAQNEEVALTRVDRTDDDPGRREEDTQCLQGLEDKMSKEKIR 177


>SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 323

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 194 SHDTVHPNFLIRAIII*EHDANGFLAAFAFEQDCVTT 84
           S D VH +     +++ + D N  ++ F F +DC+TT
Sbjct: 168 SQDIVHRDLKCENLLL-DKDLNIIISDFGFARDCLTT 203


>SB_5121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 33  NSVVALSQAKMEQLQLFRGD-TVLLKGKRRKETVCIVLSDDNCPDEKIR 176
           N  + L+ A+ E++ L R D T    G+R ++T C+   +D    EKIR
Sbjct: 129 NEKLPLTHAQNEEVALTRVDRTDDDPGRREEDTQCLQGLEDKMSKEKIR 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,876,313
Number of Sequences: 59808
Number of extensions: 347756
Number of successful extensions: 1034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)