Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20671
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   138   2e-33
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   138   2e-33
Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   133   6e-32
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    31   0.60 
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    29   1.4  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    29   1.4  
Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    27   7.4  
AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans Na/Ca,K-excha...    27   7.4  
Z81586-7|CAB04693.1|  359|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  138 bits (334), Expect = 2e-33
 Identities = 58/81 (71%), Positives = 71/81 (87%)
 Frame = +2

Query: 251 ENGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVET 430
           E GKRVH+LPIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F V+  MR VEFKVVET
Sbjct: 114 EYGKRVHVLPIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVET 173

Query: 431 DPSPFCIVAPDTVIHCDGEPI 493
           DP+P CIVAPDTVIH +G+PI
Sbjct: 174 DPAPACIVAPDTVIHYEGDPI 194



 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 43/78 (55%), Positives = 60/78 (76%)
 Frame = +3

Query: 3   LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
           LI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+ETV IVL+ DNCP++KI+M 
Sbjct: 32  LIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIKMN 91

Query: 183 XXXXXXXXXXXSDVVSIA 236
                       DVVSI+
Sbjct: 92  KVVRNNLRSRLGDVVSIS 109


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  138 bits (334), Expect = 2e-33
 Identities = 58/81 (71%), Positives = 71/81 (87%)
 Frame = +2

Query: 251 ENGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVET 430
           E GKRVH+LPIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F V+  MR VEFKVVET
Sbjct: 114 EYGKRVHVLPIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVET 173

Query: 431 DPSPFCIVAPDTVIHCDGEPI 493
           DP+P CIVAPDTVIH +G+PI
Sbjct: 174 DPAPACIVAPDTVIHYEGDPI 194



 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 43/78 (55%), Positives = 60/78 (76%)
 Frame = +3

Query: 3   LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
           LI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+ETV IVL+ DNCP++KI+M 
Sbjct: 32  LIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIKMN 91

Query: 183 XXXXXXXXXXXSDVVSIA 236
                       DVVSI+
Sbjct: 92  KVVRNNLRSRLGDVVSIS 109


>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  133 bits (322), Expect = 6e-32
 Identities = 54/79 (68%), Positives = 70/79 (88%)
 Frame = +2

Query: 257 GKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDP 436
           G R+H+LPIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F V+  MR VEFKVVET+P
Sbjct: 117 GTRIHVLPIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEP 176

Query: 437 SPFCIVAPDTVIHCDGEPI 493
           +P CIV+PDT+IH +G+PI
Sbjct: 177 APACIVSPDTMIHYEGDPI 195



 Score =  100 bits (240), Expect = 5e-22
 Identities = 45/83 (54%), Positives = 63/83 (75%)
 Frame = +3

Query: 3   LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
           LIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE+V I++SD++CP+EK+RM 
Sbjct: 32  LIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKESVAIIVSDESCPNEKVRMN 91

Query: 183 XXXXXXXXXXXSDVVSIAPCPSV 251
                       DVVSI P P++
Sbjct: 92  RVVRNNLRIRLGDVVSITPAPNL 114


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 296 QLNHQLAVCGLVFHFH*--RTRSYGYHIRKTHTKVVSHDTVHPNFLIR 159
           +LNH+L   GL  +F     T S  YH +  HT + SH+ ++   L+R
Sbjct: 20  KLNHKLDFVGLTLYFQSPGETVSLEYHQKGGHTSITSHE-IYEKQLVR 66


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 424 DHFELDGAHAPPDHEGVVTMDR-TVSLHEVRLQVYFE 317
           D+ + D    PPD  GVVT ++   S++ +R +V FE
Sbjct: 222 DYSKKDSTFKPPDFTGVVTCEKPDKSIYTIRAKVEFE 258


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 424 DHFELDGAHAPPDHEGVVTMDR-TVSLHEVRLQVYFE 317
           D+ + D    PPD  GVVT ++   S++ +R +V FE
Sbjct: 222 DYSKKDSTFKPPDFTGVVTCEKPDKSIYTIRAKVEFE 258


>Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical
           protein F35C12.2a protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 394 GHARRRVQSGRNRSITILHRGS*YRN 471
           G   RR  S R +S+ ILH G+ +RN
Sbjct: 292 GSELRRRSSARRQSVPILHSGTMFRN 317


>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 15  EAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDD---NCPD 164
           +++SDD    A +     + ++  G   + K K  K   CI+LS+D   N PD
Sbjct: 120 KSLSDDMERAAATFRNPHESEIVPGAMYIFKQKHGKAYRCIILSEDGDMNIPD 172


>AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans
           Na/Ca,K-exchanger protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 394 GHARRRVQSGRNRSITILHRGS*YRN 471
           G   RR  S R +S+ ILH G+ +RN
Sbjct: 292 GSELRRRSSARRQSVPILHSGTMFRN 317


>Z81586-7|CAB04693.1|  359|Caenorhabditis elegans Hypothetical
           protein T05F1.9 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 291 ESSIGSMWTRFPFSLKDTELWIPHQKDAH 205
           E S    WT F +   D + W P ++D H
Sbjct: 256 EISFDGDWTLFNYDGLDAKKWNPEERDGH 284


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = -2

Query: 483  PSQCITVSGATMQNGDGSVSTTLNSTARMPPRTMKVSSRWIGR*ASMKYGFKYTSNRLPV 304
            PSQ  +   ++     GS  TTL ST+  P ++  + S       S   G   TS  +  
Sbjct: 872  PSQSTSPVESSTTPSPGSPGTTLTSTSPSPSQSTTIGSTQ----GSTSPGISTTSEEMTS 927

Query: 303  RPSTES--SIGSMWTRFPFSLKDT 238
            + ST++  S GS  T+ P ++ D+
Sbjct: 928  QGSTQTPGSTGSTVTQ-PSTVSDS 950


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 343 HGGLPSDPS*RHLHGPGGHARRRVQSGRNR 432
           HG     P  RH HG  GH R     G  R
Sbjct: 261 HGSRSGSPGGRHGHGGSGHHRGGRHGGHGR 290



 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 343 HGGLPSDPS*RHLHGPGGHARRRVQSGRNR 432
           HG     P  RH HG  GH R     G  R
Sbjct: 310 HGSRSGSPGGRHGHGGSGHHRGGRHGGHGR 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,277,465
Number of Sequences: 27780
Number of extensions: 261625
Number of successful extensions: 690
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)