Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20671
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 438 DGSVSTTLNSTARMPPRTMKVSS 370
           +G   TTLN+T    P  ++++S
Sbjct: 298 NGPTQTTLNATTLFCPPNLRLTS 320


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 438 DGSVSTTLNSTARMPPRTMKVSS 370
           +G   TTLN+T    P  ++++S
Sbjct: 388 NGPTQTTLNATTLFCPPNLRLTS 410


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 15/71 (21%), Positives = 27/71 (38%)
 Frame = -3

Query: 230 GYHIRKTHTKVVSHDTVHPNFLIRAIII*EHDANGFLAAFAFEQDCVTTEELKLLHFGL* 51
           G  + +  ++++     H    + A I+    ++  L        CV+ E L +    L 
Sbjct: 256 GKMVNQKFSELIQSKPQHARRKVLAGIVQTKGSDAELICVTTGTKCVSGEHLSVSGGALN 315

Query: 50  KCHD*VVIADC 18
            CH  VV   C
Sbjct: 316 DCHAEVVARRC 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,700
Number of Sequences: 438
Number of extensions: 3090
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)