Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20671
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 142 2e-34
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 142 2e-34
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 136 6e-33
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.56
At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1) con... 28 3.0
At1g56010.1 68414.m06427 transcription activator NAC1 (NAC1) con... 28 3.0
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 27 6.9
At1g12940.1 68414.m01503 high-affinity nitrate transporter, puta... 27 6.9
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 27 6.9
At3g61150.1 68416.m06843 homeobox-leucine zipper family protein ... 27 9.1
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 27 9.1
At1g48850.1 68414.m05469 chorismate synthase, putative / 5-enolp... 27 9.1
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 142 bits (343), Expect = 2e-34
Identities = 57/79 (72%), Positives = 72/79 (91%)
Frame = +2
Query: 257 GKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDP 436
GKRVHILP+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP
Sbjct: 115 GKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDP 174
Query: 437 SPFCIVAPDTVIHCDGEPI 493
+ +C+VAPDT I C+GEP+
Sbjct: 175 AEYCVVAPDTEIFCEGEPV 193
Score = 101 bits (242), Expect = 3e-22
Identities = 45/84 (53%), Positives = 60/84 (71%)
Frame = +3
Query: 3 LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
L+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C + KIRM
Sbjct: 30 LVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMN 89
Query: 183 XXXXXXXXXXXSDVVSIAPCPSVK 254
DV+S+ CP VK
Sbjct: 90 KVVRSNLRVRLGDVISVHQCPDVK 113
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 142 bits (343), Expect = 2e-34
Identities = 57/79 (72%), Positives = 72/79 (91%)
Frame = +2
Query: 257 GKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDP 436
GKRVHILP+DD+VEG+TGNLF+ YLKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP
Sbjct: 115 GKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDP 174
Query: 437 SPFCIVAPDTVIHCDGEPI 493
+ +C+VAPDT I C+GEP+
Sbjct: 175 AEYCVVAPDTEIFCEGEPV 193
Score = 103 bits (246), Expect = 9e-23
Identities = 46/84 (54%), Positives = 61/84 (72%)
Frame = +3
Query: 3 LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
L+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C + KIRM
Sbjct: 30 LVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMN 89
Query: 183 XXXXXXXXXXXSDVVSIAPCPSVK 254
DV+S+ CP VK
Sbjct: 90 KVVRSNLRVRLGDVISVHQCPDVK 113
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 136 bits (330), Expect = 6e-33
Identities = 53/79 (67%), Positives = 71/79 (89%)
Frame = +2
Query: 257 GKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDP 436
G RVHILP+DD++EG++GN+F+ YLKPYF+EAYRP+ + D F+VRGGMR++EFKV+ETDP
Sbjct: 116 GNRVHILPLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDP 175
Query: 437 SPFCIVAPDTVIHCDGEPI 493
+ +C+VAPDT I C+GEPI
Sbjct: 176 AEYCVVAPDTEIFCEGEPI 194
Score = 101 bits (243), Expect = 2e-22
Identities = 46/87 (52%), Positives = 61/87 (70%)
Frame = +3
Query: 3 LIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMX 182
L+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C + KIRM
Sbjct: 31 LVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADETCDEPKIRMN 90
Query: 183 XXXXXXXXXXXSDVVSIAPCPSVKMEN 263
DV+S+ CP VK N
Sbjct: 91 KVVRSNLRVRLGDVISVHQCPDVKYGN 117
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.56
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 89 TTEELKLLHFGL*KCHD*VVIAD 21
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1)
contains Pfam PF02365: No apical meristem (NAM) domain;
identical to NAC1 GB:AAF21437 GI:6649236 from
[Arabidopsis thaliana]
Length = 324
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 490 RFTVTVYYGIRSHDAKW*WICFDHFELDGAHAPPDH 383
R T+ Y G K W+ + F L G+H PP+H
Sbjct: 120 RKTLVFYQGRAPRGRKTDWVMHE-FRLQGSHHPPNH 154
>At1g56010.1 68414.m06427 transcription activator NAC1 (NAC1)
contains Pfam PF02365: No apical meristem (NAM) domain;
identical to NAC1 GB:AAF21437 GI:6649236 from
[Arabidopsis thaliana]
Length = 257
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 490 RFTVTVYYGIRSHDAKW*WICFDHFELDGAHAPPDH 383
R T+ Y G K W+ + F L G+H PP+H
Sbjct: 53 RKTLVFYQGRAPRGRKTDWVMHE-FRLQGSHHPPNH 87
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 245 RTRSYGYHIRKTHTKVVSHDTVHPNFLIRAII 150
RT S +++ HTK++ H+ + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At1g12940.1 68414.m01503 high-affinity nitrate transporter,
putative similar to trans-membrane nitrate transporter
protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 502
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 366 IVTTPSWSGGACAPSSSKWSKQIHHHFASW 455
++ P W G C PSS K +++ ++ A W
Sbjct: 440 LIYFPQWGGMFCGPSSKKVTEE-DYYLAEW 468
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 221 IRKTHTKVVSHDTVHPNFLIRAIII*EHDANGF 123
++K K+ H+T +FLIR ++ EH +GF
Sbjct: 355 VKKNEVKIEVHETGERDFLIR--VVQEHKQDGF 385
>At3g61150.1 68416.m06843 homeobox-leucine zipper family protein /
homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to
Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis
thaliana, EMBL:AF077335
Length = 808
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 375 TPSWSGGACAPSSSKWSK 428
T ++ GG CA S KWSK
Sbjct: 572 TDNFCGGVCASSLQKWSK 589
>At2g45540.1 68415.m05663 WD-40 repeat family protein /
beige-related contains Pfam PF02138: Beige/BEACH domain;
contains Pfam PF00400: WD domain, G-beta repeat (3
copies)
Length = 2946
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 387 SGGACAPSSSKWSKQIHHHFASWLLIP*YTVTVN 488
S G P S+W + FA+W+ I + T+N
Sbjct: 373 SSGLLGPGESRWPFTNGYAFATWIYIESFADTLN 406
>At1g48850.1 68414.m05469 chorismate synthase, putative /
5-enolpyruvylshikimate-3-phosphate phospholyase,
putative similar to chorismate synthase from
Lycopersicon esculentum [SP|Q42884], Corydalis
sempervirens [SP|P27793]; contains Pfam chorismate
synthase domain PF01264
Length = 436
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 350 AYRPIHRDDTFMVRGGMRAVE 412
AYRP H D T+ ++ G+R+V+
Sbjct: 150 AYRPSHADATYDMKYGVRSVQ 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,643,767
Number of Sequences: 28952
Number of extensions: 245184
Number of successful extensions: 713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -