Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20670
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 114 7e-27
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 1.5
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 1.5
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 27 1.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 1.9
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 3.4
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.5
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 4.5
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 5.9
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar... 25 5.9
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 25 5.9
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.8
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc... 25 7.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 114 bits (274), Expect = 7e-27
Identities = 52/86 (60%), Positives = 66/86 (76%)
Frame = +1
Query: 1 IKGNVGFVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQAL 180
++GNVGFVFT DL E R+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL
Sbjct: 80 VRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQAL 139
Query: 181 SIPTKISKGTIEIINDVHILKPGDKL 258
IPTKI++GTIEI +DVH++ K+
Sbjct: 140 GIPTKITRGTIEITSDVHLVSKDAKV 165
Score = 87.8 bits (208), Expect = 7e-19
Identities = 40/74 (54%), Positives = 51/74 (68%)
Frame = +3
Query: 252 QVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 431
+VG SEATLLNMLNISPF+YG+ V +YD G +F+PEILD+ EDL + + + A+
Sbjct: 164 KVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAI 223
Query: 432 SLAIGYPTIASAPH 473
SL YPTI S H
Sbjct: 224 SLGANYPTILSVMH 237
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 221 MISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 96
+IS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 17 ASCSPAETSLKAVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK 196
A + E ++A R++ + + P + + PTT +R LS++ SL K
Sbjct: 131 AKKAKTEAPVEAANKSLRSRKKTPEIAAPA-NIEPEVAPTTKTPKKRAALSNEEKQSLKK 189
Query: 197 FQRVLL 214
FQ +L
Sbjct: 190 FQSAML 195
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 27.1 bits (57), Expect = 1.5
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Frame = +1
Query: 1 IKGNVGFVFTRG--DLVEGRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEK 159
+ G VG +FT D V G E+ VQ AR GA+AP + VIPA G P +
Sbjct: 96 LHGAVGLLFTNSKPDEVIG---YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVE 152
Query: 160 TSFF---------QALSIPTKISKGTIEIINDVHILKPGDKLE 261
+ L +PT + G + ++ D + G +L+
Sbjct: 153 DDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLD 195
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 172 QALSIPTKISKGTIEIINDVHILKPGDKLELLKPPFST 285
+AL+I T + I+ ++ + + P D LL PP S+
Sbjct: 102 EALTISTPVDPINIDELDRAYAVSPSDTSNLLHPPTSS 139
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 59 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKS 220
+ +R++ R L+ P +S PP TPA+ + + ++P+ R++L++
Sbjct: 79 SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILEN 132
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 128 PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 226
PPTT + + +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 104 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 217
L HC + P A Q KPL S+ + SL KF+ LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 228 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 106
IVD NS + R + L ++G L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 155 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRPSTRSPRV 27
+G PV + + G++ P AGAW L N L T ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPBP8B7.08c |||leucine carboxyl methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 5.9
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = -1
Query: 90 SWSLDFVLQQFVTAFN 43
+WS+D +LQ+F+ +F+
Sbjct: 51 TWSIDHILQKFIESFD 66
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 397 LARRSSGLMSRISGAKIVPESYTCLTTR 314
LAR SS SGAK+VP+ + +T +
Sbjct: 276 LARVSSSFGRPTSGAKVVPQIHNTVTVQ 303
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 34 GDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIP 189
GD++EGR+ L+ V R G + + + + L E + Q L +P
Sbjct: 211 GDILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLP 262
>SPCC1739.09c |cox13||cytochrome c oxidase subunit
VIa|Schizosaccharomyces pombe|chr 3|||Manual
Length = 130
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 400 NLARRSSGLMSRISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTCHRAS 239
++ R+ G +SR VP+ L+ R Y N N L V +E R+S
Sbjct: 2 SMMNRNIGFLSRTLKTS-VPKRAGLLSFRAYSNEAKVNWLEEVQAEEEHAKRSS 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,445
Number of Sequences: 5004
Number of extensions: 44887
Number of successful extensions: 141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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