Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20670
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 111 3e-25
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 111 3e-25
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 111 3e-25
06_01_0080 + 644021-645463 30 1.1
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 29 1.4
06_01_0486 - 3455030-3455770 29 2.5
01_06_1014 - 33810112-33811995 29 2.5
12_02_0090 + 13493311-13494180 28 4.4
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 28 4.4
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 4.4
10_03_0035 - 7265037-7265455,7265684-7265812,7265909-7265951,726... 27 5.8
03_05_0907 + 28678909-28679253 27 5.8
02_04_0571 - 23963088-23963174,23963265-23963512,23963913-239639... 27 5.8
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 27 5.8
01_05_0060 + 17742566-17742826,17744132-17744246,17746818-177469... 27 7.7
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 111 bits (267), Expect = 3e-25
Identities = 50/84 (59%), Positives = 66/84 (78%)
Frame = +1
Query: 7 GNVGFVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSI 186
GNVG +FT+GDL E R+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+I
Sbjct: 87 GNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNI 146
Query: 187 PTKISKGTIEIINDVHILKPGDKL 258
PTKI+KGT+EII V ++K GDK+
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKV 170
Score = 101 bits (243), Expect = 2e-22
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = +3
Query: 252 QVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 431
+VG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++
Sbjct: 169 KVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASV 228
Query: 432 SLAIGYPTIASAPH 473
SLAI YPTIA+APH
Sbjct: 229 SLAISYPTIAAAPH 242
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 111 bits (267), Expect = 3e-25
Identities = 50/84 (59%), Positives = 66/84 (78%)
Frame = +1
Query: 7 GNVGFVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSI 186
GNVG +FT+GDL E R+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+I
Sbjct: 87 GNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNI 146
Query: 187 PTKISKGTIEIINDVHILKPGDKL 258
PTKI+KGT+EII V ++K GDK+
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKV 170
Score = 101 bits (243), Expect = 2e-22
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = +3
Query: 252 QVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 431
+VG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++
Sbjct: 169 KVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASV 228
Query: 432 SLAIGYPTIASAPH 473
SLAI YPTIA+APH
Sbjct: 229 SLAISYPTIAAAPH 242
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 111 bits (267), Expect = 3e-25
Identities = 50/84 (59%), Positives = 66/84 (78%)
Frame = +1
Query: 7 GNVGFVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSI 186
GNVG +FT+GDL E R+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+I
Sbjct: 87 GNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNI 146
Query: 187 PTKISKGTIEIINDVHILKPGDKL 258
PTKI+KGT+EII V ++K GDK+
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKV 170
Score = 100 bits (240), Expect = 5e-22
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +3
Query: 252 QVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 431
+VG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ +DL KF +GV+ VA++
Sbjct: 169 KVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASV 228
Query: 432 SLAIGYPTIASAPH 473
SLAI YPTIA+APH
Sbjct: 229 SLAISYPTIAAAPH 242
>06_01_0080 + 644021-645463
Length = 480
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 228 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 121
I+D N N R K++EERG L+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 44 LKAVTNCWRTKSRLQLVPVPLP 109
L+AV WR+ +RLQ +P PLP
Sbjct: 428 LRAVCRPWRSNARLQPLPPPLP 449
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 95 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKF 199
P P P C S PP TP + R P + PS P +
Sbjct: 66 PPPSPRCPSCHPPYTPPT-PRPPPTPPYVPSPPPY 99
>01_06_1014 - 33810112-33811995
Length = 627
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 74 KSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK--FQRVLLKSSTMYT 235
K R++L P+ +P + S PP PAS K L + + + +R +L++STM T
Sbjct: 104 KDRMKL-PLHVPVIKPSVPPLLPASSPAKLLPANVSEEWRRLEIERKILENSTMST 158
>12_02_0090 + 13493311-13494180
Length = 289
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = +2
Query: 8 ATLASCSPAETSLKAVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPS 187
AT ++ PA S L ++ VP P SS TT ++ P S+ S
Sbjct: 106 ATTSAPKPATASSPTKVPALSVNPILSIIGVPSPTTTSSLATTTTSTAVLFPRSTLSSAS 165
Query: 188 LPKFQR-----VLLKSSTMYT 235
P F KSST YT
Sbjct: 166 TPSFTTTSSPVTAPKSSTKYT 186
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 95 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK 196
P P PH S PP P S + LSSKL P P+
Sbjct: 51 PPPPPHRPSPSPPPNPLS-SKLWLSSKLSPPPPE 83
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 263 SSNLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTD 114
SS+ S G +CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 322 SSSPSAG-GICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
>10_03_0035 -
7265037-7265455,7265684-7265812,7265909-7265951,
7266321-7266344
Length = 204
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 169 FQALSIPTKISKGTIEIINDVHILKPGDKLELLKPP 276
F L +P K+ + +I D+H+ K +K + PP
Sbjct: 88 FDPLVLPCKLRRKAGSVIKDIHLKKEREKNRVPPPP 123
>03_05_0907 + 28678909-28679253
Length = 114
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 146 RPVLWAGMTTDNGAMAPGRAGA 81
RP+L NGA APG AGA
Sbjct: 53 RPLLHGSAAAANGASAPGNAGA 74
>02_04_0571 -
23963088-23963174,23963265-23963512,23963913-23963999,
23964023-23964143,23964257-23964366,23964464-23964635,
23965615-23965648,23965830-23965849
Length = 292
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 353 CT*NSGHQTRGSPCQVPSWXXXXXXXFFGYWIPNYCFS 466
C+ + GH +GS C++ +W W+ + FS
Sbjct: 241 CSHSGGHALQGSECELTTWSATKQQKSGKIWLKDIIFS 278
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 306 SYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 431
SYG V V DSGT A + LD + ++F VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
>01_05_0060 +
17742566-17742826,17744132-17744246,17746818-17746993,
17747323-17747418,17747504-17747782
Length = 308
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = -2
Query: 161 VFSGPRPVLWAGM---TTDNGAMAPGR--AGAWTLFSNSLSRPSTRSPRVNTKPT 12
+F P P W T A A R + AW L S +RP+ R PR+ T
Sbjct: 18 LFLAPNPCCWKAAPRATVRASASAARRTLSSAWELPGPSAARPAARKPRLEELDT 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,502,812
Number of Sequences: 37544
Number of extensions: 330979
Number of successful extensions: 1080
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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