Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20670
         (474 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        131   3e-31
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        32   0.21 
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          31   0.37 
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              30   0.85 
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  29   1.5  
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            29   2.6  
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78)               28   3.4  
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  131 bits (316), Expect = 3e-31
 Identities = 59/87 (67%), Positives = 74/87 (85%)
 Frame = +1

Query: 1   IKGNVGFVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQAL 180
           IKGN+GFVFT+ DL + R  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL
Sbjct: 64  IKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQAL 123

Query: 181 SIPTKISKGTIEIINDVHILKPGDKLE 261
           +IPTKI++GTIEIINDVH++K  +KL+
Sbjct: 124 AIPTKIARGTIEIINDVHLIKKDEKLK 150


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -1

Query: 228 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 106
           I+D  NS   +  R  K+LEERG L+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +2

Query: 26  SPAETSLKAVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQR 205
           S + TS  A+   WR K    L  + L    SS P +TPAS+     ++ L PSL   Q 
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQE 619

Query: 206 VLLKSS 223
             +  S
Sbjct: 620 TNVPKS 625


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 134 WAGMTTDNGAMAPGRAGAWTLFSNSLSRP 48
           W+  T D     PGRA AW+L+S +L  P
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTLPIP 622


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 67   ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 240
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 241  KPGDK 255
             PG K
Sbjct: 2129 TPGKK 2133


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 248  PGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 144
            P F+ C +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1847 PNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +3

Query: 228 CTHLEAR*QVGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRA 395
           CT+      +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +
Sbjct: 73  CTYGAMFAVIAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVS 132

Query: 396 KFQAGVANVAALSLAI 443
              A VA  A  +LAI
Sbjct: 133 IGAALVATGALTTLAI 148


>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 53  VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 151
           V +C R        PVP PH ++S  PT P SV
Sbjct: 2   VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34


>SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78)
          Length = 355

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 366 EFQVQK*FQNHIPA*QQDHMRMERCSTC*EGWLQKLQLVTGL 241
           +F++    Q  + A  ++  R+ERC    +G+L +L  +TGL
Sbjct: 143 DFKLALRLQKELNAEAREEQRLERCKGTVDGYLLRLYQLTGL 184


>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 65  WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 187
           +RT+SR+ L    LP+   + PP+  TP  +   PLS    PS
Sbjct: 68  YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 182 ERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRA-GAWTLFSNSLSRPSTRSPRVNTKPTLP 6
           E AWK+EV +G      +G     G  APG+    W + ++    P   S  +N  PT+ 
Sbjct: 717 ETAWKREVVNGGMVTSPSGGRGTLGLEAPGQVYSQWKVITDGTMSP---SDILNYAPTVT 773

Query: 5   L 3
           L
Sbjct: 774 L 774


>SB_34008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 35  ETSLKAVTNCWRTKSRLQLVPV--PLPHCQSSFPPTTPASVQRKPLS 169
           E +  A T    TK   Q  P   PLP  Q++   + P  V RKP S
Sbjct: 617 EAAAAAATTLTTTKQAKQAKPQRKPLPKTQANKASSKPTKVTRKPTS 663


>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +1

Query: 19   FVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSF--FQALSIPT 192
            FVFT   +V    + +   V +P R   + P    +PA     G    S    Q LS   
Sbjct: 1112 FVFTSTGIVRASTRKV---VPSPLRRSKVPP---TVPAQRLFNGDRVESICNVQNLSRCP 1165

Query: 193  KISKGTIEIINDVHILKPGDKLELLKPP 276
            KIS  T+     VH     D  E+LK P
Sbjct: 1166 KISNATVLDKESVHTDASNDDSEVLKSP 1193


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 276 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVA 416
           +   +N+       +V   YD   +    I+D KP+DLR    A VA
Sbjct: 83  MFKKVNVGFVDMSFIVLHPYDIACVQVLVIIDAKPKDLRLPTDAYVA 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,412
Number of Sequences: 59808
Number of extensions: 347825
Number of successful extensions: 1095
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)