Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20670
(474 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 107 4e-24
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 107 4e-24
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 107 4e-24
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 31 0.40
At5g04470.1 68418.m00445 expressed protein 29 1.6
At3g08670.1 68416.m01007 expressed protein 29 1.6
At3g50610.1 68416.m05534 hypothetical protein 29 2.1
At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly... 28 2.8
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 28 2.8
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 3.7
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 3.7
At5g10700.1 68418.m01239 expressed protein 27 6.5
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,... 27 8.6
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 27 8.6
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 27 8.6
At4g28780.1 68417.m04115 GDSL-motif lipase/hydrolase family prot... 27 8.6
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 8.6
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 107 bits (257), Expect = 4e-24
Identities = 48/86 (55%), Positives = 66/86 (76%)
Frame = +1
Query: 1 IKGNVGFVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQAL 180
++GNVG +FT+GDL E +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L
Sbjct: 84 LQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVL 143
Query: 181 SIPTKISKGTIEIINDVHILKPGDKL 258
+IPTKI+KGT+EII V ++K GDK+
Sbjct: 144 NIPTKINKGTVEIITPVELIKQGDKV 169
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/74 (55%), Positives = 59/74 (79%)
Frame = +3
Query: 252 QVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 431
+VG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +G++ V +L
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSL 227
Query: 432 SLAIGYPTIASAPH 473
+LA+ YPT+A+APH
Sbjct: 228 ALAVSYPTLAAAPH 241
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 107 bits (257), Expect = 4e-24
Identities = 48/86 (55%), Positives = 66/86 (76%)
Frame = +1
Query: 1 IKGNVGFVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQAL 180
++GNVG +FT+GDL E +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L
Sbjct: 84 LQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVL 143
Query: 181 SIPTKISKGTIEIINDVHILKPGDKL 258
+IPTKI+KGT+EII V ++K GDK+
Sbjct: 144 NIPTKINKGTVEIITPVELIKQGDKV 169
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/74 (55%), Positives = 59/74 (79%)
Frame = +3
Query: 252 QVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 431
+VG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +G++ V +L
Sbjct: 168 KVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSL 227
Query: 432 SLAIGYPTIASAPH 473
+LA+ YPT+A+APH
Sbjct: 228 ALAVSYPTLAAAPH 241
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 107 bits (257), Expect = 4e-24
Identities = 48/86 (55%), Positives = 66/86 (76%)
Frame = +1
Query: 1 IKGNVGFVFTRGDLVEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQAL 180
++GNVG +FT+GDL E +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L
Sbjct: 85 LQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVL 144
Query: 181 SIPTKISKGTIEIINDVHILKPGDKL 258
+IPTKI+KGT+EII V ++K GDK+
Sbjct: 145 NIPTKINKGTVEIITPVELIKKGDKV 170
Score = 99.1 bits (236), Expect = 1e-21
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +3
Query: 252 QVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 431
+VG+SEA LL L I PFSYGLVV+ VYD+G++F PE+L++ +DL KF AGV+ + AL
Sbjct: 169 KVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITAL 228
Query: 432 SLAIGYPTIASAPH 473
SLAI YPT+A+APH
Sbjct: 229 SLAISYPTVAAAPH 242
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 31.1 bits (67), Expect = 0.40
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = -2
Query: 119 TDNGAMAPGRAGAWTLFSNSLSRPSTRSPRVNTKPTLP 6
T+NGA G A S SLS PS SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 101 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 217
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 119 TDNGAMAPGRAGAWTLFSNSLSRPSTRSPRVNTKPTLPL 3
T ++ GRA + SLSRPS+ PRV P P+
Sbjct: 285 TSGPTISGGRAASNGRTGPSLSRPSSPGPRVRNTPQQPI 323
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 KGNVGFVFTRGDL--VEGRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 159
KGNV + D EGR KLL+ VQ + G+ + P H+ G+G +K
Sbjct: 47 KGNVNVEGFQDDFKPTEGR-KLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKK 99
>At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly
identical to atranbp1b [Arabidopsis thaliana] GI:2058284
Length = 217
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 270 LQKLQLVTGLQDVYIVDDFNSTL*NFGRDGKSLEERG 160
L+++ + TG +D + D S L F +DG +ERG
Sbjct: 36 LEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERG 72
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 154 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKL 258
E + L +P +++KGT+E++ D + + G +L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQL 183
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 228 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 121
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 228 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 121
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At5g10700.1 68418.m01239 expressed protein
Length = 200
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 343 PESY-TCLTTRPYENGEMFNMLRRVASEAPTCHRASR 236
PE+ TC+ T+PY ++ + +++ T H+AS+
Sbjct: 157 PENIPTCIATKPYPKSQVSSFFKKLKLCKNTIHKASQ 193
>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
GI:3869280 from [Carica papaya]
Length = 724
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 390 RAKFQAGVANVAALSLAIGYPTIAS 464
+ K AGV +A LS+A+G P + +
Sbjct: 528 KIKLHAGVNKIALLSVAVGLPNVGT 552
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 67 ENKVQAPARPGAIAPLSVVIPAHNTGLGPE 156
EN + P +P IAP + V + T + PE
Sbjct: 620 ENAAETPVKPSVIAPETPVRTSEQTVIAPE 649
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 67 ENKVQAPARPGAIAPLSVVIPAHNTGLGPE 156
EN + P +P IAP + V + T + PE
Sbjct: 620 ENAAETPVKPSVIAPETPVRTSEQTVIAPE 649
>At4g28780.1 68417.m04115 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL3 (GI:15054386), EXL1
(GI:15054382), EXL2 (GI:15054384) [Arabidopsis
thaliana]; contains Pfam profile PF00657:
Lipase/Acylhydrolase with GDSL-like motif
Length = 367
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 71 FSNSLSRPSTRSPRVNTKPTLPL 3
FSN L+ P S ++ ++PTLP+
Sbjct: 72 FSNGLNLPDIISEQIGSEPTLPI 94
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 95 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP 193
P PL SS PP P+S LS L PS P
Sbjct: 58 PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPP 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,499
Number of Sequences: 28952
Number of extensions: 253192
Number of successful extensions: 775
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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