Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20668
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 176 2e-45
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 102 6e-23
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 92 8e-20
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 71 2e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 69 9e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 68 2e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 66 5e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 65 8e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 62 8e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 3e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 60 4e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 59 5e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 55 9e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 54 3e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 53 3e-08
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 53 3e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 52 6e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 51 2e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 50 3e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 47 3e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 45 1e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 36 0.007
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.023
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.092
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.092
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.1
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 4.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.0
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 176 bits (429), Expect = 2e-45
Identities = 86/150 (57%), Positives = 105/150 (70%), Gaps = 1/150 (0%)
Frame = +3
Query: 258 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LAYQ-TGSGKTLAYILPAIVHINNQPPIRRGDGPI 614
K +G++ PTPIQ Q WP+AMSG++ + TGSGKTL+Y LPAIVHIN QP + GDGPI
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 615 ALVLAPTRELAQQIQQVAADFGHTSYVRNT 704
LVLAPTRELA QIQQ FG +S +RNT
Sbjct: 198 VLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 102 bits (244), Expect = 6e-23
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDG 608
+ ++GY++PT IQAQ P SG++ + +TGSGKT+A++LP HI +Q P++ G+G
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 609 PIALVLAPTRELAQQI 656
PIA+++ PTRELA QI
Sbjct: 492 PIAIIMTPTRELAVQI 507
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 91.9 bits (218), Expect = 8e-20
Identities = 45/111 (40%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Frame = +3
Query: 339 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 519 Y-QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 659
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 70.5 bits (165), Expect = 2e-13
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 500
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 501 GKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 653
G++ + +TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 68.5 bits (160), Expect = 9e-13
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTG 530
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A QTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 531 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 671
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 672 DFGHTSYVR 698
F + S+VR
Sbjct: 277 KFCYRSWVR 285
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 67.7 bits (158), Expect = 2e-12
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +3
Query: 366 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKT 542
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A +TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 543 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 665
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 66.1 bits (154), Expect = 5e-12
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYQ-TGSGKTLAYILPAIVH 572
F+ N +++ V G+K+ TP+QA P+ + K+ + TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 674
+ + G G AL++APTRELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 65.3 bits (152), Expect = 8e-12
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVH 572
F+E D + + + +G+K PTPIQ + P+ ++ ++ + QTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 573 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+ NN P A+VLAPTRELA QI + G + VR+
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRS 145
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 62.1 bits (144), Expect = 8e-11
Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 504 KN*L-AYQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 674
++ L A +TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.1 bits (139), Expect = 3e-10
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVH 572
F+ + + + G+K PTPIQ + P+ + G++ + +TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+ + AL+L+P RELA Q +V DF + +R+
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRS 170
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 59.7 bits (138), Expect = 4e-10
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L-AYQTGSGKTLAYILPAIVH 572
F+ N + +G+ +G++ PT IQ + P+A+ GK+ + A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVA 668
+ +P ++ L+L PTRELA Q VA
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 59.3 bits (137), Expect = 5e-10
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
FE+ + G+ G++ P+PIQ + PIA+SG++ LA + G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
++ + + L+L PTRELA Q QV G
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 55.2 bits (127), Expect = 9e-09
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KN*LAY-QTGSGKTLAYIL 557
++ FEE + +G+ +M +++P+ IQ + P+ +S +N + Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 558 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 698
+ ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 53.6 bits (123), Expect = 3e-08
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 510 *L-AYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
L A +TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.2 bits (122), Expect = 3e-08
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LAY---QTGSGKTLAYILPAIVHINNQPP--IRRGDG 608
M PT IQ+ P ++ + A+ QTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 609 PIALVLAPTRELAQQIQQVA 668
A+++APTREL QQI VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 510 *LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+A Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALG 113
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 52.4 bits (120), Expect = 6e-08
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 467
P P++ ++ +++ K + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 468 IQAQGWPIAMSGKN*LAYQ-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 644
IQ P S ++ LA TGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
Query: 645 AQQIQQVA 668
+QI + A
Sbjct: 128 CEQIYRQA 135
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 50.8 bits (116), Expect = 2e-07
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPA 563
I F++ N + +G+ G++ P+ IQ + + ++ LA Q+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 564 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+ I+ +++ AL+LAPTRELAQQIQ+V G
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALG 111
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 50.0 bits (114), Expect = 3e-07
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
F + ++ +K + EPT IQ + G+N + +TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+ P G AL+L PTRELA QI + A G
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.8 bits (106), Expect = 3e-06
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +3
Query: 447 GYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 617
G+ +P PIQ+ P A G + + TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 618 LVLAPTRELAQQIQQ 662
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.8 bits (101), Expect = 1e-05
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +3
Query: 363 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYQ--TGSG 536
S ++ P + E A+ + + G+++ TP+Q + + Q TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 537 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 698
KTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 605
+ + G++ P+ +Q P ++ G + L ++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 606 GPIA-LVLAPTRELAQQIQQVAADF 677
G ++ LVL TRELA QI+ A F
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARF 142
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 656
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.092
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.092
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 249 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 76
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 75 HDYFSDLVEDVYLNYGFFLTQG 10
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 458 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 333
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 318 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 449
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 495 MSGKN*-LAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 650
+SGK+ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 318 PYEVEEYRNKHEVTVS 365
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 435 VKTMGYKEPTPIQAQGW-PIAMSGKN*LAYQTGSGKTLAYILPAIVHI 575
++ GY +P P+QA G+ P+ + + TG + ++P + +
Sbjct: 1057 IQPTGYMQPIPVQATGYQPLMVQPTGLQPHMTGVMPQVTGVMPQMTGV 1104
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 447 PLSLHLVAHNQENL--LLQSIE 388
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,706
Number of Sequences: 5004
Number of extensions: 63735
Number of successful extensions: 230
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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