Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20668
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 135 4e-32
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 103 1e-22
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 98 7e-21
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 95 4e-20
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 67 1e-11
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 64 1e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 58 7e-09
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 58 7e-09
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 54 9e-08
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 54 1e-07
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 52 5e-07
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 49 4e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 49 4e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 48 1e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 46 3e-05
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 44 2e-04
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 43 2e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 36 0.024
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 33 0.17
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 31 0.69
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 30 1.6
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.6
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 29 2.8
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.7
SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.5
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 135 bits (326), Expect = 4e-32
Identities = 64/148 (43%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 419
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIR 596
+ ++ + Y +PT IQ Q PIA+SG++ + +TGSGKT A++ PA+VHI +QP ++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
Query: 597 RGDGPIALVLAPTRELAQQIQQVAADFG 680
GDGPI L+ APTREL QQI A FG
Sbjct: 587 VGDGPIVLICAPTRELCQQIYTEARRFG 614
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 103 bits (248), Expect = 1e-22
Identities = 59/131 (45%), Positives = 76/131 (58%)
Frame = +3
Query: 312 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 491
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---- 112
Query: 492 AMSGKN*LAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 671
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA
Sbjct: 113 -------------------FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAY 153
Query: 672 DFGHTSYVRNT 704
G +R+T
Sbjct: 154 SVGKHCKLRST 164
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 97.9 bits (233), Expect = 7e-21
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Frame = +3
Query: 336 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L 515
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++ +
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 516 AY-QTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFG 680
+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFG 202
Query: 681 HTSYVR 698
+R
Sbjct: 203 RPLGIR 208
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 95.5 bits (227), Expect = 4e-20
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +3
Query: 270 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 449
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 450 YKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 626
++ PTPIQ Q MSG++ + +TGSGKTLAY LP + + + P GD P+AL+L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Query: 627 APTRELAQQI 656
PTREL QQ+
Sbjct: 152 TPTRELMQQV 161
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 79.8 bits (188), Expect = 2e-15
Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 510 *LA-YQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAAD 674
+A QTGSGKT A++LP + + N P A+ +APTRELA QI A
Sbjct: 751 VMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARK 810
Query: 675 FGHTSYVR 698
F H + +R
Sbjct: 811 FAHGTMLR 818
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 79.0 bits (186), Expect = 3e-15
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Frame = +3
Query: 360 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSG 536
VSG I F E F + + + GY+ PTP+Q PI M+G++ +A QTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 537 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 686
KT AY+LP + + Q P+AL +APTRELA+QI A F HT
Sbjct: 529 KTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHT 579
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 66.9 bits (156), Expect = 1e-11
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L-AYQTGSGKTLAYILPA 563
++ F + G+ G+ PT IQ QG P+A+SG++ L A +TGSGKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 564 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 683
I + Q DG ALV++PTRELA Q +V G+
Sbjct: 109 IETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIGN 147
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 464
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 465 PIQAQGWPIAMSGKN*L-AYQTGSGKTL 545
PIQ Q P+ +SG++ + TGSGK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
V QPF K+FY P + K +P E +E+R E + V G P++ + + +
Sbjct: 59 VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILD 118
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
+K Y++PTPIQAQ P+ MSG++ +A
Sbjct: 119 VLKKNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 537 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 677
K +Y P + P I G IA+V+ PTRELA QI + F
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKF 167
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 58.0 bits (134), Expect = 7e-09
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
FE+ + G+ G+ +P+PIQ + P+A++G++ LA + G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+ + ALVL PTRELA Q Q+ + G
Sbjct: 109 TDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 58.0 bits (134), Expect = 7e-09
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
FE+ + G+ G+ +P+PIQ + P+A++G++ LA + G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+ + ALVL PTRELA Q Q+ + G
Sbjct: 109 TDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 54.4 bits (125), Expect = 9e-08
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*L-AYQTGSGKTLAYILPAIVHINNQPPIRRGD 605
QG+K MG+ T IQ + + G++ L A +TGSGKTLA+++P +V + + + +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRN 643
Query: 606 GPIALVLAPTRELAQQIQQVAAD 674
G ++++PTREL+ Q VA D
Sbjct: 644 GTGVIIISPTRELSLQTYGVARD 666
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 54.4 bits (125), Expect = 9e-08
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Frame = +3
Query: 345 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 509
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 510 *LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-H 683
+A Q+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H
Sbjct: 145 MIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKH 199
Query: 684 TSYVR 698
+++
Sbjct: 200 CPHIK 204
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVHINNQPPIRRGD 605
+ V +G+ PTPIQA P+A+ GK+ A TG+GKT A++LP + + +P +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSP 80
Query: 606 GPIALVLAPTRELAQQ 653
LV+ PTRELA Q
Sbjct: 81 AIRVLVITPTRELAIQ 96
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 52.0 bits (119), Expect = 5e-07
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 510 *LA-YQTGSGKT 542
+A QTGSGKT
Sbjct: 174 VMACAQTGSGKT 185
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPI 614
+T G+++P+ IQ + + G++ +A Q+G+GKT + + + I+ Q +R P
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQ 67
Query: 615 ALVLAPTRELAQQIQQVAADFG 680
ALVL+PTRELA QIQ+V G
Sbjct: 68 ALVLSPTRELANQIQKVVLALG 89
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPA 563
I FE+ + + + V GYK+PTP+Q PI ++ +A QTGSGKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 564 IVHINNQPP 590
+ I + P
Sbjct: 934 LSRIYMEGP 942
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 491
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 492 AMSG 503
G
Sbjct: 197 MAHG 200
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 549 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 656
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 48.8 bits (111), Expect = 4e-06
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Frame = +3
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPP 590
P V++ +K MG +P PIQ + P S K+ L +TG+GK+L ++LP++ Q P
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP 222
Query: 591 IRRGDGPIALVLAPTRELA-QQIQQVAADFGHTSYV 695
RG G I ++ PTRELA Q + +V+ G S V
Sbjct: 223 -GRGYGTI--IVVPTRELASQMLYEVSRLLGDKSIV 255
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 48.8 bits (111), Expect = 4e-06
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 620
MG K+PT IQ P + G++ + +TGSGKT A+ LP + + + P G A+
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP-----YGIFAV 79
Query: 621 VLAPTRELAQQI 656
VL PTRELA QI
Sbjct: 80 VLTPTRELAFQI 91
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +3
Query: 465 PIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTR 638
PIQA + G++ + +TG+GKTL++ LP + + + + +RG P LV+APTR
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTR 157
Query: 639 ELAQQI 656
ELA+Q+
Sbjct: 158 ELAKQV 163
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 16/98 (16%)
Frame = +3
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L--AYQTGSGKTLAYILPAIVHIN--- 578
PD + + + G+ +PTPIQ+ P A+ + A +TGSGKTLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYK 197
Query: 579 ----NQPPI-------RRGDGPIALVLAPTRELAQQIQ 659
Q P +G +AL++APTRELA Q++
Sbjct: 198 KRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVK 235
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Frame = +3
Query: 417 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L-AYQTGSGKTLAYILPAIVHINNQPPI 593
D V + + + +PT IQ P + + + A QTGSGKTLAY+ P +VH +
Sbjct: 387 DDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAP-LVHRLREDEE 445
Query: 594 RRG-----DGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
R G P A ++ P RELA QI + A H + R+
Sbjct: 446 RHGILARLKRPRACIVVPARELATQILKTAKSLCHHARFRS 486
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADFGHTSYVR 698
Q+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V G +V+
Sbjct: 130 QSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMHVK 189
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 44.4 bits (100), Expect = 9e-05
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 486 PIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 662
P+ M GK+ +A +TGSGKT A+++P + G AL+L+PTRELA Q Q+
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQK 369
Query: 663 VAADFGHTSYVRNT 704
+ G + ++++
Sbjct: 370 FIKELGRFTGLKSS 383
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Frame = +3
Query: 351 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYQT- 527
EV + G P + F +Y + +G PT +Q WP + G++
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 528 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD 674
GSGK LAY+LP I I + +GP+ L+L + ++ V D
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCED 285
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 605
+G+ G+++P+PIQ + P+ G + +A ++G+GKT + + A+ ++ I +
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENV-----ITESN 80
Query: 606 GPIALVLAPTRELAQQIQQVAADFG 680
++L PTRE+A Q++ V G
Sbjct: 81 CIQIIILTPTREIAVQVKDVICAIG 105
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 9 ETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 609 PIALVLAPTRELAQQIQQVAADFG 680
P ALVL+PTRELA QIQ+V G
Sbjct: 4 PQALVLSPTRELANQIQKVVLALG 27
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 226 QNMRRPDWDSFHSNLSTKTFMIHILQFSKD 315
+N RR WDSFHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 485
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Frame = +3
Query: 276 KNFYDPHPTVLKRSPYEVEEY-RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGY 452
K D + LK E +E+ +N TV+ + P+ E P V + + +G+
Sbjct: 467 KELPDENDENLKEFAPEDDEFLKNLSLDTVAQMAAGIPV----ETETPPEVYKALGQLGF 522
Query: 453 KEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQP 587
Q Q +SG + L TG+GK+L Y LPA ++ P
Sbjct: 523 SSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSP 568
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 318 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 449
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 447 GYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIV 569
GY + P+Q Q ++ K+ L TG+GKT+ Y +PA++
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALL 177
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 267 VGVKRIPIWASHVLPSREF 211
VGV+ I WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 202 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 92
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 330 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 422
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 277 LLKGWSETNPNLGVACSAL 221
LLKGW TN N +AC+A+
Sbjct: 150 LLKGWGATNFNHAMACAAV 168
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 268 GWSETNPNLGVACS--ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFH 98
GW T + S AL+RI + ++ C +YRR CC L +W H +
Sbjct: 181 GWRVTLRVIAATTSQQALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTN 239
Query: 97 GYYSN 83
Y+S+
Sbjct: 240 TYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,570,927
Number of Sequences: 59808
Number of extensions: 468124
Number of successful extensions: 1263
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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