Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20668
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       74   2e-15
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 73.7 bits (173), Expect = 2e-15
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
 Frame = +3

Query: 351 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQT 527
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++ +A  QT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 528 GSGKTLAYILPAIVHINNQP----PIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
           GSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   S +
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSIL 302

Query: 696 R 698
           +
Sbjct: 303 K 303


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 570 AQWLARCRPTFCRNPFGTPTNSFQ 499
           AQ+   C P+  R P G PT+  Q
Sbjct: 388 AQFATPCTPSPPRGPGGVPTSVIQ 411


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 249 PIWASHVLPSREFFFP 202
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 249 PIWASHVLPSREFFFP 202
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 309 KRSPYEVEEYRNKHEVTV 362
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 157 TETNYRRICCLLQIWNHRFHGYYSN 83
           T  N RR    ++ W H F   Y N
Sbjct: 416 TVENNRRNPWFVEFWEHHFQCRYPN 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,037
Number of Sequences: 438
Number of extensions: 4528
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)