Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20668
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 180 8e-46
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 165 3e-41
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 165 3e-41
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 128 4e-30
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 126 1e-29
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 126 1e-29
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 120 1e-27
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 120 1e-27
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 120 1e-27
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 111 4e-25
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 99 3e-21
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 91 9e-19
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 90 1e-18
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 82 4e-16
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 78 7e-15
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 76 2e-14
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 75 3e-14
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 73 2e-13
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 71 1e-12
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 70 1e-12
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 70 1e-12
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 70 2e-12
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 69 4e-12
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 69 4e-12
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 66 3e-11
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 63 2e-10
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 62 5e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 58 4e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 58 4e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 58 6e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 58 6e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 58 7e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 57 1e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 57 1e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 57 1e-08
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 56 2e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 55 4e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 55 4e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 55 5e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 55 5e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 53 2e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 52 3e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 51 7e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 51 7e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 51 9e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 50 2e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 50 2e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 2e-06
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 49 3e-06
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 48 8e-06
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 47 1e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 45 6e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 44 1e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 43 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 43 2e-04
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 42 4e-04
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 42 5e-04
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 40 0.001
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 0.002
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.005
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 38 0.005
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 36 0.026
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 36 0.026
At2g25460.1 68415.m03049 expressed protein 30 1.3
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 29 3.0
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 4.0
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 4.0
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 28 5.2
At5g37540.1 68418.m04521 aspartyl protease family protein weak s... 28 5.2
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.2
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.2
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.2
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 28 6.9
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 28 6.9
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.9
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.9
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.9
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 28 6.9
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 28 6.9
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.2
At5g40390.1 68418.m04899 raffinose synthase family protein simil... 27 9.2
At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransfer... 27 9.2
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 27 9.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 180 bits (438), Expect = 8e-46
Identities = 84/155 (54%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
Frame = +3
Query: 243 RLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 422
+L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRR 599
V + VK G+ EPTPIQ+QGWP+AM G++ + +TGSGKTL+Y+LPAIVH+N QP +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 600 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 704
GDGPI LVLAPTRELA QIQQ A+ FG +S ++ T
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTT 204
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 165 bits (401), Expect = 3e-41
Identities = 76/156 (48%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 419
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIR 596
+ + + +G+ EPTPIQAQGWP+A+ G++ + +TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 597 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 704
+ DGPI L+LAPTRELA QIQ+ + FG S VR+T
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRST 270
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 165 bits (401), Expect = 3e-41
Identities = 76/156 (48%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 419
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIR 596
+ + + +G+ EPTPIQAQGWP+A+ G++ + +TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 597 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 704
+ DGPI L+LAPTRELA QIQ+ + FG S VR+T
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRST 270
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 128 bits (309), Expect = 4e-30
Identities = 58/142 (40%), Positives = 89/142 (62%), Gaps = 1/142 (0%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 611
+K Y++PT IQ Q PI +SG++ + +TGSGKT A++LP IVHI +QP ++R +GP
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGP 302
Query: 612 IALVLAPTRELAQQIQQVAADF 677
I ++ APTRELA QI A F
Sbjct: 303 IGVICAPTRELAHQIFLEAKKF 324
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 126 bits (304), Expect = 1e-29
Identities = 59/135 (43%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 611
+K + Y++P PIQAQ PI MSG++ + +TGSGKTL ++LP + HI +QPP+ GDGP
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Query: 612 IALVLAPTRELAQQI 656
I LV+APTREL QQI
Sbjct: 471 IGLVMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 126 bits (304), Expect = 1e-29
Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 611
+K + Y++P PIQ Q PI MSG++ + +TGSGKTL ++LP + HI +QPP+ GDGP
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
Query: 612 IALVLAPTRELAQQIQQVAADFGHTSYVR 698
I LV+APTREL QQI F +R
Sbjct: 604 IGLVMAPTRELVQQIHSDIRKFSKPLGIR 632
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 120 bits (288), Expect = 1e-27
Identities = 63/139 (45%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 647
QAQ WPIAM G++ +A +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 648 QQIQQVAADFGHTSYVRNT 704
QIQ+ A FG +S + T
Sbjct: 244 TQIQEEAVKFGRSSRISCT 262
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 120 bits (288), Expect = 1e-27
Identities = 63/139 (45%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 647
QAQ WPIAM G++ +A +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 648 QQIQQVAADFGHTSYVRNT 704
QIQ+ A FG +S + T
Sbjct: 244 TQIQEEAVKFGRSSRISCT 262
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 120 bits (288), Expect = 1e-27
Identities = 63/139 (45%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 647
QAQ WPIAM G++ +A +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 648 QQIQQVAADFGHTSYVRNT 704
QIQ+ A FG +S + T
Sbjct: 244 TQIQEEAVKFGRSSRISCT 262
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 111 bits (267), Expect = 4e-25
Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 5/149 (3%)
Frame = +3
Query: 273 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 440
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 441 TMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 617
+ G+ PTPIQAQ WPIA+ ++ +A +TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 618 LVLAPTRELAQQIQQVAADFGHTSYVRNT 704
L+LAPTRELA QIQ A FG +S + T
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCT 539
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 98.7 bits (235), Expect = 3e-21
Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 4/147 (2%)
Frame = +3
Query: 249 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 428
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYQ-TGSGKTLAYILPAIVHINNQP---PIR 596
+ +K G PTPIQ QG P+ +SG++ + TGSGKTL ++LP I+ + PI
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIA 169
Query: 597 RGDGPIALVLAPTRELAQQIQQVAADF 677
G+GPIALV+ P+RELA+Q V F
Sbjct: 170 AGEGPIALVICPSRELAKQTYDVVEQF 196
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 90.6 bits (215), Expect = 9e-19
Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 464
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 465 PIQAQGWPIAMSGKN*LAYQ-TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAP 632
PIQ QG P+ ++G++ + TGSGKTL ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 633 TRELAQQIQQVAADF 677
+RELA+Q +V F
Sbjct: 231 SRELARQTYEVVEQF 245
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Frame = +3
Query: 336 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L 515
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 516 AY-QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 683
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 81.8 bits (193), Expect = 4e-16
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +3
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 611
V + G+ P+PIQAQ WPIAM ++ +A +TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GP 302
Query: 612 IALVLAPTRELAQQIQQVAADFGHTSYV 695
LVL+PTRELA QIQ A FG +S +
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKI 330
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 419
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 77.8 bits (183), Expect = 7e-15
Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 497
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 498 SGKN*LAY-QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQ 662
G++ + +TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 663 VAADFG 680
V + G
Sbjct: 210 VLREAG 215
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 76.2 bits (179), Expect = 2e-14
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Frame = +3
Query: 261 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVHINNQPPIRRGDG-- 608
+ Y +PTP+Q PI + G++ +A QTGSGKT A+ P I I ++R G
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 234
Query: 609 ---PIALVLAPTRELAQQIQQVAADFGHTSYVR 698
P+A++L+PTRELA QI A F + + V+
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKKFSYQTGVK 267
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 75.4 bits (177), Expect = 3e-14
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Frame = +3
Query: 315 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 488
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 489 IAMSGKN*LA-YQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTRELAQQI 656
A++GK+ LA TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 657 QQVAADFG 680
+ A G
Sbjct: 203 EDQAKMLG 210
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 72.5 bits (170), Expect = 2e-13
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Frame = +3
Query: 267 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVHINNQPPIRRGDG---- 608
Y +PTP+Q PI +G++ +A QTGSGKT A+ P I I I R G
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGV 223
Query: 609 -PIALVLAPTRELAQQIQQVAADFGHTSYVR 698
P+A++L+PTRELA QI A F + + V+
Sbjct: 224 YPLAVILSPTRELACQIHDEARKFSYQTGVK 254
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 70.5 bits (165), Expect = 1e-12
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Frame = +3
Query: 339 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 507 N*LA-YQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 653
A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 70.1 bits (164), Expect = 1e-12
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTG 530
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 531 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 695
SGKT A+ P I I + R G P A++L+PTRELA QI A F + + V
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 696 R 698
+
Sbjct: 259 K 259
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 70.1 bits (164), Expect = 1e-12
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTG 530
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 531 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 695
SGKT A+ P I I + R G P A++L+PTRELA QI A F + + V
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 696 R 698
+
Sbjct: 259 K 259
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 69.7 bits (163), Expect = 2e-12
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = +3
Query: 357 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYQ-TGS 533
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++ A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 534 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 665
GKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LAYQ-TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 617
MG++ PT +QAQ P+ +SG++ L TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 618 LVLAPTRELAQQIQQVAADFGH 683
LV+ PTREL Q+ + H
Sbjct: 108 LVIVPTRELCLQVYETLEKLLH 129
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 68.5 bits (160), Expect = 4e-12
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVH 572
FE N V +K GYK PTPIQ + P+ +SG + +A +TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 698
+ P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 65.7 bits (153), Expect = 3e-11
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 504 KN*LAY-QTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 656
K+ +A +TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 63.3 bits (147), Expect = 2e-10
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Frame = +3
Query: 264 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*L-AYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 620
MG+ T IQA+ P M G++ L A +TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 621 VLAPTRELAQQIQQVAAD 674
V+ PTRELA Q VA +
Sbjct: 231 VICPTRELAIQSYGVAKE 248
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 61.7 bits (143), Expect = 5e-10
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*-LAYQTGSGKTLAYILPA 563
++ F+E + V ++ + + PT IQ G P M K+ L TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 564 IVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
IV + + G P +VL PTREL++Q+ +VA H + R+
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRS 220
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
FE+ + G+ G++ P+PIQ + PIA++G++ LA + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
I+ + + A+++ PTRELA Q QV + G
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
FE+ + G+ G++ P+PIQ + PIA++G++ LA + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
I+ + + A+++ PTRELA Q QV + G
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 605
+ +K G++ T +Q PI + GK+ LA +TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 606 GP---IALVLAPTRELAQQ 653
I LV+ PTRELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 58.0 bits (134), Expect = 6e-09
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVH 572
FE ++ + K +G ++PTP+Q P ++G++ L QTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQ 662
+ P G ALV+ PTRELA Q+ +
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAE 144
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 57.6 bits (133), Expect = 7e-09
Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Frame = +3
Query: 315 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 494
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 495 MSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQI 656
+ G + + +TG GKTLA++LP + + N P + G P LVL PTRELA
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA--- 187
Query: 657 QQVAADF 677
+QVAADF
Sbjct: 188 KQVAADF 194
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 605
+ +K GY+ T +Q PI + GK+ LA +TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 606 --GPI-ALVLAPTRELAQQ 653
PI ALV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVH 572
F++ +G++ G+K T +Q P+ + GK+ LA +TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 573 INNQPPIRRGDGP---IALVLAPTRELAQQ 653
+ PP R + I LV+ PTRELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLA 548
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+ + QTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 549 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 662
+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 56.4 bits (130), Expect = 2e-08
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Frame = +3
Query: 327 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 507 N*L-AYQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 674
+ L A +TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L-AYQTGSGKTLAYILPA 563
++ F + D ++G+K Y + T +Q+ P A+ G++ L A +TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 564 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 653
+ ++ + DG ++++PTRELA Q
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
FE+ + +G+ G+++P+PIQ + PIA++G + LA + G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 674
I+ + + + A++L PTRELA Q QV +
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 54.8 bits (126), Expect = 5e-08
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
FE+ + +G+ G+++P+PIQ + PIA++G + LA + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 674
I+ + + A++L PTRELA Q QV +
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 54.8 bits (126), Expect = 5e-08
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVH 572
FE+ + +G+ G+++P+PIQ + PIA++G + LA + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 573 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 674
I+ + + A++L PTRELA Q QV +
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Frame = +3
Query: 447 GYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 614
G++ TP+QA+ P S K+ + TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 615 ALVLAPTRELAQQIQQVAADFGHT 686
++++PTREL+ QI +VA F T
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVST 116
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +3
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPP 590
P+++ ++ +G+ PT IQ + P +G++ + + QTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-- 141
Query: 591 IRRGDGPIALVLAPTRELAQQIQQVA 668
A+++ PTREL Q+ +VA
Sbjct: 142 ---RSSVQAVIVVPTRELGMQVTKVA 164
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 51.2 bits (117), Expect = 7e-07
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +3
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHI-NNQPPIR 596
+ + + + G ++ PIQ AM G++ + +TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 597 RGDGPIALVLAPTRELAQQIQQ 662
RG P+ LVLAPTRELA+Q+++
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK 196
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 51.2 bits (117), Expect = 7e-07
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Frame = +3
Query: 447 GYKEPTPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 614
G++ TP+QA+ P S K+ + TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 615 ALVLAPTRELAQQIQQVA 668
++++PTREL+ QI +VA
Sbjct: 94 GVIISPTRELSAQIHKVA 111
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 50.8 bits (116), Expect = 9e-07
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L-AYQTGSGKTLAYILPAIVH 572
F E + + + +K + P IQA + + GK+ + A Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 573 INN---QPPIRRGDG-PIALVLAPTRELAQQI 656
+ Q + G P +VL PT ELA Q+
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +3
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINN-QPPIR 596
+ + +K G ++ PIQ AM G++ + +TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 597 RGDGPIALVLAPTRELAQQIQQ 662
RG P LVLAPTRELA+Q+++
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK 208
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Frame = +3
Query: 477 QGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 644
Q P A++GK+ LA TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 645 AQQIQQVAADFG 680
Q++ A G
Sbjct: 62 CVQVEDQAKMLG 73
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYQ-TGSGKTLAYILPAIVH 572
FEE PD + ++ G+ PT +Q+ P + G + + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 573 INNQPPIRRGDGP--------IALVLAPTRELAQQI 656
I R A+++AP+REL QI
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 49.2 bits (112), Expect = 3e-06
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKT--LAYI 554
PI+ F++ D V +GV GYK+P+ IQ + + G++ +A Q+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 555 LPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTS 689
+ IV+I+++ LVL+P+RELA Q ++ G HT+
Sbjct: 80 VCQIVNISSRK-------VQVLVLSPSRELASQTEKTIQAIGAHTN 118
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 47.6 bits (108), Expect = 8e-06
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Frame = +3
Query: 408 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQ 584
+ P +++ ++ G PIQ A+ G++ +A +TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 585 P----PIRR-GDGPIALVLAPTRELAQQIQQ 662
RR G P LVLAPTRELA+Q+++
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 46.8 bits (106), Expect = 1e-05
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Frame = +3
Query: 324 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS 500
E E N VT SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 501 G--KN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 671
K+ +A GSGKT ++L + ++ P +R P AL + PTRELA Q +V
Sbjct: 129 PPHKHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQ 183
Query: 672 DFG 680
G
Sbjct: 184 KMG 186
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +3
Query: 462 TPIQAQGWPIAMSGKN*LA-YQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLA 629
TP+QA P+ S K+ TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 630 PTRELAQQIQQVAADFGHT 686
PTREL+ QI VA F T
Sbjct: 98 PTRELSTQIYNVAQPFVST 116
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVH 572
F+E+ + + G + T +Q + GK+ L +TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 573 I----NNQPPIRRGDGPIALVLAPTRELAQQI 656
+ N+ + + AL+L PTRELA QI
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +3
Query: 357 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGS 533
T G+E PI F + + V +GV G+++P+ IQ + + G++ +A Q+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 534 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
GKT L ++ + AL+L+PTRELA Q ++ G
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIG 127
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 42.7 bits (96), Expect = 2e-04
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Frame = +3
Query: 273 NKNFYDPH---PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 434
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHI----NNQPPIRR 599
+ G + T +Q + GK+ L +TG+GK++A++LPAI + N+ + +
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 600 GDGPIALVLAPTRELAQQI 656
L+L PTRELA QI
Sbjct: 450 VAPIFVLILCPTRELASQI 468
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 41.9 bits (94), Expect = 4e-04
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLA 548
EVH + F+ + + +G+ G+++P+ IQ +G G + + Q+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 549 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+ + ++ + ALVLAPTRELAQQI++V G
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALG 131
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 41.5 bits (93), Expect = 5e-04
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 510 *LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+ Q+G+GKT + + ++ + ALVLAPTRELAQQI++V G
Sbjct: 79 VIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALG 131
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPP 590
PD ++ G+ G+++P+ IQ +G G + + Q+G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV 108
Query: 591 IRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+ ALVLAPTRELAQQI++V G
Sbjct: 109 QCQ-----ALVLAPTRELAQQIEKVMRALG 133
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +3
Query: 423 VQQGVKTMGYKEPTPIQAQGW-----PIAMSGKN*LAYQTGSGKTLAYILPAIVHINNQP 587
+++ ++ MG P+Q W P + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 588 PIRRGDGPIALVLAPTRELAQQIQQV 665
P+R ALV+ PTR+LA Q++ V
Sbjct: 91 PVR---CLRALVVLPTRDLALQVKDV 113
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 38.3 bits (85), Expect = 0.005
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 17/97 (17%)
Frame = +3
Query: 423 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKN*L-AYQTGSGKTLAYILPAIVHI------- 575
+ + + + +KEPT IQ + +A GK+ + A +TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 576 -------NNQPPIRRGDGPI-ALVLAPTRELAQQIQQ 662
+ DG + AL++ PTRELA Q+ +
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTE 297
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 38.3 bits (85), Expect = 0.005
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Frame = +3
Query: 417 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L-AYQTGSGKTLAYILPAIVHINN---- 581
D V ++ G+ P+ QA P +SGK+ + A +TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 582 QPPIRRGDGP-----IALVLAPTRELAQQI 656
R + P I+L+L P L +Q+
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQV 178
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 35.9 bits (79), Expect = 0.026
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 447 GYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 620
G++ P+ +Q + P A+ G + + ++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 621 VLAPTRELAQQI 656
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 35.9 bits (79), Expect = 0.026
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 447 GYKEPTPIQAQGWPIAMSGKN*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 620
G++ P+ +Q + P A+ G + + ++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 621 VLAPTRELAQQI 656
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 205 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 89
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 267 VGVKRIPIWASHVLPSREFFF 205
VGVK I W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 656
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 8 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -2
Query: 246 IWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPITRH- 73
+W VL + F F K R ++S A R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 72 -DYFSDLVEDVYLNYGFFLTQGPP 4
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 515 GVPNGFRQNVGLHLASHCAHK*PTAYSER*WSDCFGLGAYQRVSTTNSAS 664
G+ +GF++ G+HL+ H H P A E +++ F + + + T + S
Sbjct: 64 GIASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At5g37540.1 68418.m04521 aspartyl protease family protein weak
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Prosite
PS00141: Eukaryotic and viral aspartyl proteases active
site; contains 1 predicted transmembrane domain
Length = 442
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 564 WLARCRPTFCRNPFGTPTNSFQT*LSASL-ELEWASVLCNP 445
W+ +C P + P PT SF LS+S +L + LC P
Sbjct: 105 WI-QCHPKKIKKPLPPPTTSFDPSLSSSFSDLPCSHPLCKP 144
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 655 ICCANSLVGAKTKAIGPSPLRI 590
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 276 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 431
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 276 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 431
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 267 VGVKRIPIWASHVLPSREF 211
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +3
Query: 345 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYQ 524
K V +S + P Y E D + G K P+Q Q +M K+
Sbjct: 170 KPSVQISNKDHETP-SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLM 228
Query: 525 -TGSGKTLAYILPA 563
TG GK+L Y LPA
Sbjct: 229 PTGGGKSLCYQLPA 242
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 267 VGVKRIPIWASHVLPSREF 211
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 267 VGVKRIPIWASHVLPSREF 211
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 86 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 232
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At5g40390.1 68418.m04899 raffinose synthase family protein similar
to galactinol-raffinose galactosyltransferase [Vigna
angularis] GI:6634701, seed imbibition protein
GB:AAA32975 GI:167100 from [Hordeum vulgare]; contains
Pfam profile PF05691: Raffinose synthase or seed
imbibition protein Sip1
Length = 783
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 434 CKDNGLQRTDAHSSSRLADSYVWKELVGVPNGFRQNVGLHLASHCAH 574
C D T+A S R+ D + + G PNG G H+ HCA+
Sbjct: 459 CNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMV-HCAY 504
>At4g01970.1 68417.m00262 galactinol-raffinose
galactosyltransferase, putative similar to
galactinol-raffinose galactosyltransferase GI:6634701
from [Vigna angularis]
Length = 807
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 431 RCKDNGLQRTDAHSSSRLADSYVWKELVGVPNGFRQNVGLHLASHCAH 574
+C + T S R+ D + W++ G P G G+H+ HC++
Sbjct: 473 QCNEFFFLATKQISIGRVGDDFWWQDPYGDPQGVYWLQGVHMI-HCSY 519
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Frame = +3
Query: 372 EVHNPIQYFEEANFP--DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYQTGSGKTL 545
E + P Y A +P Y Q G GY P QG+P G Y G
Sbjct: 504 EGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQGYP--AQGYPPPQYPQGHPPQY 561
Query: 546 AYILPAIVHINNQPPIRRGD 605
Y P H PP + D
Sbjct: 562 PYQGPPPPHYGQAPPKNKKD 581
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,973
Number of Sequences: 28952
Number of extensions: 326774
Number of successful extensions: 1097
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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