Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20667
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.62 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 98   TNTSRPPTTRWGTSSTT 148
            + T+RP TT W T  TT
Sbjct: 1069 STTTRPTTTNWPTQGTT 1085



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 82   CTTVDYEYFQTTHHEMGHIQYYLQYRDQPVVFRD 183
            CT V  + ++      G I  Y   RDQ V F D
Sbjct: 2108 CTNVIKKGWKVVRDRRGRIGPYAYLRDQWVSFDD 2141



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 44   GTSLMVKILGSNSARQSITNTSRPPTTRWGTSSTT 148
            GTS +  +    +A+ + + TS   TT W   STT
Sbjct: 1330 GTSNVNVVDIVTTAKPAQSTTSVSTTTSWNPGSTT 1364


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 101 NTSRPPTTRWGTSSTTCS 154
           N  RPP+T  GT+  T S
Sbjct: 453 NNKRPPSTELGTNIYTSS 470


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 346 YRSHTPWTCSDTVCS 390
           YR    WT SD  C+
Sbjct: 680 YRQEAQWTSSDNPCT 694


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 145 STGCAPSRGGWSGSIRNRLSCT 80
           S GC P +GG   +I++    T
Sbjct: 389 SPGCGPGQGGLQPTIKSDYGLT 410


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 145 STGCAPSRGGWSGSIRNRLSCT 80
           S GC P +GG   +I++    T
Sbjct: 389 SPGCGPGQGGLQPTIKSDYGLT 410


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,795
Number of Sequences: 336
Number of extensions: 3441
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)